Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2349 ATGGCTTTCTGCAACAAGCTTGGAAACCTCTTGAGGCAGGGTGCCACTCAGAGCAGCCATGCTCCCGTTTCATCCATGCTTAACTATCTTCGCCATATGTCATCAAGCAAGCTTTTCATTGGAGGCCTTTCTTATGGAGTTGATGATCAGTCTCTTAAGGATGCATTTGCAAGCTATGGGGAGGTCGTTGAGGCAAGAGTTATCACTGATAGAGACACCGGAAGATCGAGGGGATTTGGTTTTGTCAACTTCACCAGTGACGAGTCTGCAACTTCAGCACTCTCTGCTATGGACGGACAGGATTTGAATGGGCGAAACATTCGTGTGTCTTATGCAAATGACAGACCTTCTGCACCTCGTGGTGGTGGTGGTGGTTATGGTGGTGGCTATGGGGATGGTTTTTCAAACCGTGGTGGCGGTGGCGGAGGTGGCGGTTGGTGA 441 0.4989 MAFCNKLGNLLRQGATQSSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFASYGEVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSAPRGGGGGYGGGYGDGFSNRGGGGGGGGW* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2349 146 MobiDBLite consensus disorder prediction 111 146 - -
Psa5g2349 146 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 143 - -
Psa5g2349 146 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 143 - -
Psa5g2349 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Psa5g2349 146 SUPERFAMILY RNA-binding domain, RBD 28 145 IPR035979 GO:0003676
Psa5g2349 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Psa5g2349 146 Gene3D - 15 146 IPR012677 -
Psa5g2349 146 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2349 Psa-Chr5 181896309 181898370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2349 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 41.573 1.50e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2349 - - gmx:100499841 207.994