Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2336 ATGGGGGATTCGACGATGGAATCAGGTGCTGGTAGTAGTGGTGGTCTGACAAAGTTCCTGGTAAAAACTTATCAGTTGGTTGATGATCCATCTACTGATGATATAATATCATGGAGTCCAAACAACAACAGTTTCATTATTAAGGACACTATTGACTTCGCCAAGAATTTTCTTAAAAATTATTTCAAACACGAAAATTTCTCCAGTTTCGTTCGTCAGCTCAATACATATGGATTTCACAAAATAAATCCTGACAAATGGGAGTTTGCTAATGAATATTTTCGAAAAGATCAATATTATCTTCTTAGTAATATTCGCCGCAAGAAAACTGTTCACCGTCACTCTCGTGGAGAAGTAGAAAGGTCTGCATTTGAAAAAGAAATTGAGAAACTTTCTAATGAAAAGGCCTCAATTGAATTAGATATTTCTAACTTCAAGCAGAAGATGCCAACTAAAAAGCTTCATGTCGAAAATCTAATGCAAAGTTTAGAAGCATTGGAGAAAAGGCATAATAATTTGAAGAACTCATTTGAAATGATTCTTCAAAATCCTACATTGGTTGAAAAAATGAATAACAAAATTGAGTTCATTTTTTCCTTAAGGTTTTCCAATAAAAGACCTTTTCCTGATGTTGCTGAAAATGCTTTTGTTGAGATTGATAGCTACAATGGAGCTCTGAAAGTTGGAAATAGTATGACTGATAATGATAGCAACTTGGGGTTGATGGAAGTTGGAAATGATTTTCCTGACATTGATACCAATTATGAATTTTTGAATTTTGAAGATATTTTTGATGAGAATGGTAACAACTTTGAATCTATGGAAGAGGGAGAAAATGCACATC 844 0.3341 MGDSTMESGAGSSGGLTKFLVKTYQLVDDPSTDDIISWSPNNNSFIIKDTIDFAKNFLKNYFKHENFSSFVRQLNTYGFHKINPDKWEFANEYFRKDQYYLLSNIRRKKTVHRHSRGEVERSAFEKEIEKLSNEKASIELDISNFKQKMPTKKLHVENLMQSLEALEKRHNNLKNSFEMILQNPTLVEKMNNKIEFIFSLRFSNKRPFPDVAENAFVEIDSYNGALKVGNSMTDNDSNLGLMEVGNDFPDIDTNYEFLNFEDIFDENGNNFESMEEGENAH 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2336 281 Coils Coil 114 148 - -
Psa5g2336 281 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 Coils Coil 156 183 - -
Psa5g2336 281 Gene3D - 13 110 IPR036388 -
Psa5g2336 281 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 12 237 - -
Psa5g2336 281 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 SUPERFAMILY "Winged helix" DNA-binding domain 16 108 IPR036390 -
Psa5g2336 281 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2336 281 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 237 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2336 Psa-Chr5 180947850 180948932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2336 19 222 HSF AT4G13980 44.498 6.66e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa5g2336 HSF_DNA-bind 1.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2336 K09419 - gmx:100786408 219.55