Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2333 ATGGAGAATTCGATGACAGAATCAAGTGGTTGTGGTAATGGTGGTCCGACAAAATTCTTAGTGAAAACATATCAAATGGTTGATGATCCATCTACCGATAATATAATATCATGGAGTCAAAGTAACGACAGCTTCATCATTAAGGATCCTGAAGAATTCACCAGCAATCTTCTTAGCAAATATTTCACACACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAATACCTATGGATTTCACAAAATAAAACATGATCAATGGGAGTTTGCTAATGAGTATTTTCTGAAAGATCAATATTGTCTTCTTGGTAATATTCACCGCAAGAAACCTGTTCACAGTCACTCTCATGCAGAAAGAGAAAGGCATGCATTTGAAGAAGAAATTGAGAAACTTTCTAATGAAAAAGCCTCTATTGAATTAGATATTTCTAACTTCAATAAGTACATGCCGGCCAAAAAACTTCATCTGGGTAATCTCGTGCAAAAATTAGAAGTATTAGAGCATAGACATAATAATTTGAAGAAATCCTTTGAAATGATTCTTCAAAATCCTAAACTCATCGATAAAATGAATAAGAAAGTTGAGCTCATTTTTTCGTCAAAAATTTCCAATAAAAGGCCATTTGTTGATGCTGGCGAAAACGCTTTTGTTGGCAACAGTAGCAACTGTGAACTAACAGAAGTTGGAAATAGTTTGGCTGATAATGAAAACAACCTTGGATTTGTGGAAGTTGAAAATGAATTTGCTGACATTGATGTCGATTTTATATTTAAGGATTTTGGAGATCTTTTTGATGACAATGATAGCAACTTTAAATTTATGGAAGAGGGAGAAAGTGCACATAAGGTTATGGGTGAAGGATGGTTACCATAA 873 0.3414 MENSMTESSGCGNGGPTKFLVKTYQMVDDPSTDNIISWSQSNDSFIIKDPEEFTSNLLSKYFTHNNFSSFVRQLNTYGFHKIKHDQWEFANEYFLKDQYCLLGNIHRKKPVHSHSHAERERHAFEEEIEKLSNEKASIELDISNFNKYMPAKKLHLGNLVQKLEVLEHRHNNLKKSFEMILQNPKLIDKMNKKVELIFSSKISNKRPFVDAGENAFVGNSSNCELTEVGNSLADNENNLGFVEVENEFADIDVDFIFKDFGDLFDDNDSNFKFMEEGESAHKVMGEGWLP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2333 290 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 256 IPR027725 -
Psa5g2333 290 Coils Coil 156 176 - -
Psa5g2333 290 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 12 256 - -
Psa5g2333 290 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2333 290 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Psa5g2333 290 Coils Coil 114 141 - -
Psa5g2333 290 Gene3D - 13 109 IPR036388 -
Psa5g2333 290 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2333 290 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2333 290 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa5g2333 290 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2333 Psa-Chr5 180692085 180693392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2333 19 206 HSF AT4G13980 47.150 3.57e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa5g2333 HSF_DNA-bind 5.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2333 K09419 - rcu:8286888 214.157