Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2321 ATGGCTCACCCAAAATCAAAACTCAAAACCCTACTTTCTCTCTCTAAACTCTTCCTTTCTTTCTCTCTCCTCCTACACACCGCCATTGCCGATGACGGCGTTTTCATGTCCAAGCTCGCGAAATCACTTTCACCAACTCCGTCAGGGTGGTCGGCGACCACATTCTGCAGCTGGACCGGCGTGAAATGCGACGGTTCTAACCGCGTTACATCTATCAACGTAGCTTCCAAGTCGATCAGCGGAACAATACCTTCCGATCTGAACTCGCTCTCTGAACTCACGTCCATCTCTTTCCAGTCCAACTCGCTCACCGGCGCGTTACCTTCACTCGCGAACCTTTCTAATCTTCAATCGGTTTTCCTCAGTAGTAACAACTTCACCTCAATCCCCGATGGTTGTTTTCAGGGACTCACCAGTCTTCAGAAACTTTCCATGACTGGAAACACCAACCTCAAACCGTGGACGTTTCCGTCGGAGTTGACACAGTCTTTGAATCTCGTTGAACTCGACCTTGGTCAAACGAACCTCGTTGGTTCCTTGCCGGATGTTTTCGGTCCATTGTTCAGTTTGCAGAAACTTCGTCTCGCTTACAACAACCTCACCGGAGATTTACCGAACTCGTTTTCAGGATCTGGGATTCAGAACTTGTGGCTCAACAATCAGCAAGATGGGTTTGGGTTCACTGGTTCTATAAATTTACTTTCTTCGATGTCTCACTTGACTCAAGTGTGGTTTCAGAAGAACAAGTTCACTGGTCCTATTCCTGATTTATCAAACTGTACTAATTTGTTTGATCTTCAGCTTCGCGATAATCAGTTAACAGGTGTTGTTCCACATTCTTTGATGAGTTTATCTAGTTTGAGGAACGTTTCATTGGATAATAATAATTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAGAGGTTACTCCTAATGATGGGATTAATAGCTTTTGTAAAACCACTCCTGGACCTTGTGATCCGAGGGTTACTACTTTGCTTGAGGTTGCTGCTGGTTTTGGGTATCCTCTTCAGTTGGCGAGTTCTTGGATAAGGAACGATCCTTGTCAAGATTGGAGCTTTGTTCTTTGTTCAGGAGGGAAGATTATTACTGTGAACTTAGCTAAGCAGAAATTGAATGGAACCATTTCACCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATCTAGCTGGTAACAACTTGTCTGGTTCCATACCAGGGAGCTTGACGGGTTTGACTCAACTTGAGGTTTTGGATGTGTCTAACAACAATCTATCTGGAGAGATTCCTAAATTTTCTACTAAAGTGAAGTTCAATTCTGCTGGTAATGCTTTGCTTGGGCCTTCTGGAGGTGATAGAGGAAATGGAACTACTCCGCCAGAGAGTTCTGGTGGTGCACCAAGTGGAAGCCCGTCGAGAAAGTCAAGTGGTTCTTCGCTGTCGCCTGCTTGGATTGCAGGTATAGCTGTTATTGCTGTGTTTTTTGTTGCAGTAGTGTTGTTTGTGTTTTGTAAGTGTTATACTAAGAATCGGAGGCATGGGGAATTTGGAAGGGTTAATAATCCTGAAAATGGAAAAGGTGAGATTAAACTTGATGTCATGAGTGTTTCCAATTCTAATGGATATGGTGGAGTTCCGAGTGAGTTACAGAGTCAAGGAAGTGAGCGTAGTGACAACCTTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTAACCGGTAATTTCAGTGTAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATTAACGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGAACATTAACACAACATCTATTTGATTGGGGTAAAAACGGATGTGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCGCGGGGAGTTGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCTGATGGGAAATATTCCGTTGAGACGAGGCTGGCAGGAACATTTGGATATTTGGCACCTGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTATGCATTTGGAGTAGTTCTGATGGAATTGATTACTGGTAGAAGGGCATTGGATGATACAATGCCTGATGAACGATCTCATTTGGTTTCATGGTTCCGCCGAGTACAAGTCAACAAGGAGAACATCCCTAAAGCAATCGATCAAACATTGAACCCCGACGAAGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTAGCAGGCCATTGCACTGCTCGCGAACCATACCAGAGGCCAGATATGGGGCATGCAGTGAATGTCCTGGTTCCTCTAGTTGAGCAATGGAAGCCTACCAGTCATGAAGAAGAAGATGGTTATGGTATTGACCTTCACATGAGCCTCCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCCACAGTGTTTAACGACACATCTTTCTCACAAACCCAATCTAGTATTCCTGCAAAACCTTCTGGATTCGCCGACTCCTTTGACTCAATGGACTGCCGATAA 2802 0.4383 MAHPKSKLKTLLSLSKLFLSFSLLLHTAIADDGVFMSKLAKSLSPTPSGWSATTFCSWTGVKCDGSNRVTSINVASKSISGTIPSDLNSLSELTSISFQSNSLTGALPSLANLSNLQSVFLSSNNFTSIPDGCFQGLTSLQKLSMTGNTNLKPWTFPSELTQSLNLVELDLGQTNLVGSLPDVFGPLFSLQKLRLAYNNLTGDLPNSFSGSGIQNLWLNNQQDGFGFTGSINLLSSMSHLTQVWFQKNKFTGPIPDLSNCTNLFDLQLRDNQLTGVVPHSLMSLSSLRNVSLDNNNLQGPFPSFGKGVEVTPNDGINSFCKTTPGPCDPRVTTLLEVAAGFGYPLQLASSWIRNDPCQDWSFVLCSGGKIITVNLAKQKLNGTISPAFGNLTDLRNLYLAGNNLSGSIPGSLTGLTQLEVLDVSNNNLSGEIPKFSTKVKFNSAGNALLGPSGGDRGNGTTPPESSGGAPSGSPSRKSSGSSLSPAWIAGIAVIAVFFVAVVLFVFCKCYTKNRRHGEFGRVNNPENGKGEIKLDVMSVSNSNGYGGVPSELQSQGSERSDNLQVFEGGNVTISIQVLRQVTGNFSVDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWGKNGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVQVNKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDGYGIDLHMSLPQALQRWQANEGTSTVFNDTSFSQTQSSIPAKPSGFADSFDSMDCR* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2321 933 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 19 933 - -
Psa5g2321 933 Pfam Leucine rich repeat 92 148 IPR001611 GO:0005515
Psa5g2321 933 Pfam Leucine rich repeat 373 428 IPR001611 GO:0005515
Psa5g2321 933 MobiDBLite consensus disorder prediction 458 477 - -
Psa5g2321 933 Pfam Leucine rich repeat N-terminal domain 332 366 IPR013210 -
Psa5g2321 933 Pfam Leucine rich repeat N-terminal domain 39 64 IPR013210 -
Psa5g2321 933 SUPERFAMILY Protein kinase-like (PK-like) 565 861 IPR011009 -
Psa5g2321 933 Pfam Protein tyrosine and serine/threonine kinase 587 859 IPR001245 GO:0004672|GO:0006468
Psa5g2321 933 SMART serkin_6 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2321 933 ProSiteProfiles Leucine-rich repeat profile. 115 136 IPR001611 GO:0005515
Psa5g2321 933 Pfam Leucine Rich Repeat 189 209 IPR001611 GO:0005515
Psa5g2321 933 PANTHER OSJNBA0070M12.3 PROTEIN 19 933 - -
Psa5g2321 933 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524
Psa5g2321 933 Gene3D Transferase(Phosphotransferase) domain 1 663 884 - -
Psa5g2321 933 SUPERFAMILY L domain-like 34 432 - -
Psa5g2321 933 Gene3D Ribonuclease Inhibitor 34 327 IPR032675 -
Psa5g2321 933 ProSiteProfiles Protein kinase domain profile. 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2321 933 CDD STKc_IRAK 591 864 - -
Psa5g2321 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Psa5g2321 933 MobiDBLite consensus disorder prediction 450 477 - -
Psa5g2321 933 SMART LRR_typ_2 187 210 IPR003591 -
Psa5g2321 933 SMART LRR_typ_2 415 439 IPR003591 -
Psa5g2321 933 SMART LRR_typ_2 391 414 IPR003591 -
Psa5g2321 933 SMART LRR_typ_2 113 136 IPR003591 -
Psa5g2321 933 Gene3D Ribonuclease Inhibitor 329 451 IPR032675 -
Psa5g2321 933 Gene3D Phosphorylase Kinase; domain 1 549 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2321 Psa-Chr5 179885035 179889177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2321 51 876 Receptor kinase-like Gene Family AT1G55610 31.121 5.09e-95 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Psa5g2321 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2321 - - gmx:100781851 1466.06