Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2310 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCGAAACGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGCTTGAGAGGTATCAGAAGTGCAACTATGGAGCACCTGAGGGTAATGTGACATCAAAGGAGGCTTTGGTATTGGAATTAAGCAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAGTCTCTACAACGCTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACTCTTGAAAGGCAGCTAGATTCTTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTCGGAGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCAAACAGAGCTCTCAGGCAAAGGATGGAGGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGCTGAAGATATGGGATACGGACGTCATCATCAAGGTCATGCACAGGGTGATGAACTATTTCAAGTTCAACCGATTGAGTGTGAACCAACTTTACAAATTGGATATCATCAGGGTGATCCAGGGTCAGTGGTGACAGCAGGGCCAAGCATGAATAACTATATGGGTGGATGGTTACCATGA 744 0.4341 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQGHAQGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2310 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 227 - -
Psa5g2310 247 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Psa5g2310 247 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa5g2310 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Psa5g2310 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Psa5g2310 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Psa5g2310 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 Coils Coil 128 148 - -
Psa5g2310 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa5g2310 247 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2310 Psa-Chr5 178889056 178893926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2310 1 247 MADS-box Gene Family AT1G24260 72.177 8.55e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa5g2310 K-box 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2310 - - gmx:547686 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2310 5 178889056 178893926 Psa5g2310 5 178889056 178893926 ECH