Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2300 ATGGATCATTTCTTCTCTCTCATTTGCCCTAATTCTCCATCAGTATGGGATGGAAAGGGATTCTCGGAGTGTTTTGATGATATTGTGTTAGGTTTTGCAGTGAATGTAGTGACTGTTGTTATGATTGTTGTGCTTGGATTTAGTCAAAAGATTGGTGGTCGTGGTCGTGGAGCTCAGAGATCAGACTCTCAGACGACTCGTCCAGCAAAATTTTTCTTGGATTTTGTACCAGCCATTGGAGCATGTTTCTCAGTTTTGGAAATAATTTTCCTGCTGAAGAAAGAACTTGACGGTAGCTATGTGGAATATTATAAATGGTTATGTAGCTGTTCTGAATTGTTGGTGTGGGCAAATATCATTCTCTTCACAAAGTATACAAGGAGTCATTACATAGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTGAAATCAATATTGGGGATTTTCCATTTGATAACAAAGTTTCCATCATTGGAGGTTTCGGTATGCATAATGGAAAGCTTAGTTATTCTCTTGAATTTATCATTTTGCATAGCTATCAATGTGATCAGGATAAAGAGATTATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAACGGAGGGGACCTTGAGGAAGGTGAAAATCATGACCTTGGAAATAATGGTTACTTTTGGGATTTGATGACTTTCAAATTCATAAGTCCTGTAATGAATCAAGGTGTGCTAAAGCAACTAGACTCTGACGATCTTCTGCCGCTACTACCTGATATGAGTCCTTCTTTCTGTCATAATATAATTTTAACAAGCTGGCGAGAACAATTGAGTAATAACGGTTCAAACCCTACTTTGCTTAGAGCACTCTGTAATGCATATGGATGGCAATATCTCTGCCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGGTTCTGCAACAAGTTCAGCAAGTTGGGATGGGTATTTATTTGCACTATCTTTGGGTCTCACATCAATAATTAAATCTTTTTTAGATACACAATATACTTTTCGTCTTTCCAAACTGAAGTTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTATTTGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTCGATGCTGACCGAACCGTTAACTTGTGTAATAGTTTTCATGATATATGGAGCCTGCCTCTACAAATTGGAGTGGCGCTTTATCTTCTGTATACTCAAGTCAAATTTGCATTTGTGTCCGGGTTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAACATTGATTGCAAGAGCCACTGAGCAAATGATGAAAGAGAAGGATGAAAGGATTCGTAGGACCGGGGAGCTTTTGACTTATATTCGCACGTTAAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGAAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCACTCTTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTTAATTCATTCCCTTGGGTTATTAATGGATTGATTGATGCCATCATTTCCTCCAGACGGCTGAGTAGGTTTCTCTGTTGCTCTGAACATAGACGCAAAGTGGGAGAGAACATTTCATGTTCATCATCATTCCTGAGTGTACAGCCTGATTCTTTACAAGATTTGACTGTCTCTATCCAAGATGCATGCTGTTCTTGGTCCAGCAGTGATGAAAAAGCATTGAATATGGTGTTGAATCATGTGACTCTTAGCCTGTCAAAGGGATCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCCGGCAAATCATCCATGTTATATTCAATTCTTGGAGAAATGCGGCTTGATCACGGATCTATCTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAATATATTATTTGGGAAAAGCTATCATCCTGAAAGGTATACAGATACAGTAAAAGCGTGTGCGTTAGATGTTGATATCTCATTGATGGCCGGTGGTGACATGGCATATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGAGTACTGTATCATGACTCGGATGTTATCATGCTCGATGATGTCCTGAGTGCAGTTGATGTACAAGTTGCTCAGTGGATCTTGCACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACTAGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTGCAGATATGATTGTAGTATTGGACAAAGGACACGTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATGGATTCAACTTCACATAATCATCAGCAATCTTGCAGCACAAATTCTTCTATAACCAAGGAGCAGTCTCTTCCTGATAGAATTGTCACGCAAGCTCTAGAGGATTCAGAGGATGTAATTGAAGTTGAGTTAAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAGTTATGCTGCTTTTACTGGCTGGTTCATTGCCGTGATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTGTGGCTTTCATATTGGGTTGATACCACAACGGAAGACAGTCAAACGAGTTACTCTATGTCTTTCTATCTGGCTATTCTATGTCTCTTTTGCATCATGAATTCCTTTTTCACACTGGTGAGAGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTACACAATAGACTGCTCAACAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGCGGAAGAATACTGAATAGGTTATCATCAGATCTTTATACAATTGATGATTCTCTTCCATTTATTATGAACATTCTCCTGGCTAATTTCGTAGGCCTGCTGGGTATTGCAATTATTTTGTCTTACGTACAGGTCTTCTTCTTAGTTTTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTAAGAAGGCTGGATAGTGTTTCTCGCTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGAGCCTTTAAATCTGAGGACTTTTTCTTTACCAAATTTAGTGACAACTTAACATTATATCAGAAGACTTCCTATACAGAGACAGTGGCAAGTCTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATAATCTCATTCATAGCCCTGATGGCTGTTGTTGGATCTCAAGGCAGTCTGCCTGTCAGCTTTGGTACCCCAGGATTGGTTGGATTGGCCCTCTCGTACGCAGCTCCAATTGTGTCCCTGCTGGGGAGTTTTCTAACAAGCTTCACTGAAACAGAGAAGGAGATGGTTTCAATTGAAAGAGCCCTTCAATATATGGACATTCCTCAAGAAGAACAAGCTGGATCTCTGTACTTGAATCCAGATTGGCCAAAACAAGGAGTTATTGAATTCCAAAATGTTACTTTGAAATATATGCCATCTTTACCACCTGCACTCTGCAATCTTAGTTTTAAAATTGAAGGAGGAACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATTCCCTTTTCCGTCTTACCCCACTACGTGCAGGCTCCATCACAGTTGATGGCATGGATATTCAAAATATTCCTGTGAGAGAACTACGCACCCATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGACTATTAAGGGATAACCTAGATCCATTCAAAATGAATGATGACTCCAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGTTGGATATTCTTGTAAAGGAAGGGGGAATGTCATTTTCAGTTGGCCAAAGGCAGCTTCTTTGCCTTGCACGGGCACTTCTTAGATCTTCAAAGGTTCTTTGTTTGGATGAATGCACTGCCAGTGTGGACATTCAAACTGCTTCGCTGCTGCAAAAAACTATATCCAGTGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGACAACATTTTAATTCTTGATCATGGGAACCTGGCTGAACAAGGAAATCCACAGATTCTTCTGAAGGATGGCACCTCTATATTTTCTAGTTTTGTTAAAGCTTCATCTCTGTAG 4425 0.3968 MDHFFSLICPNSPSVWDGKGFSECFDDIVLGFAVNVVTVVMIVVLGFSQKIGGRGRGAQRSDSQTTRPAKFFLDFVPAIGACFSVLEIIFLLKKELDGSYVEYYKWLCSCSELLVWANIILFTKYTRSHYIVFNRVLCFWWILKSILGIFHLITKFPSLEVSVCIMESLVILLNLSFCIAINVIRIKRLSSKSSLLEDPLLSNGGDLEEGENHDLGNNGYFWDLMTFKFISPVMNQGVLKQLDSDDLLPLLPDMSPSFCHNIILTSWREQLSNNGSNPTLLRALCNAYGWQYLCLGLLKVINDGIGFAGPLLLNKLIKFLQQGSATSSASWDGYLFALSLGLTSIIKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLFVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLCCSEHRRKVGENISCSSSFLSVQPDSLQDLTVSIQDACCSWSSSDEKALNMVLNHVTLSLSKGSFVAVIGEVGSGKSSMLYSILGEMRLDHGSIYSNGSIAYVPQVPWILSGTVRDNILFGKSYHPERYTDTVKACALDVDISLMAGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVAQWILHNAILGPLMKGKTRLLCTHNIQAISSADMIVVLDKGHVKWMGSSADFPTSSYTAFSPLNEMDSTSHNHQQSCSTNSSITKEQSLPDRIVTQALEDSEDVIEVELRKEGKVELGVYKSYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTTEDSQTSYSMSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLNKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFTKFSDNLTLYQKTSYTETVASLWLSLRLQLLAAFIISFIALMAVVGSQGSLPVSFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGSLYLNPDWPKQGVIEFQNVTLKYMPSLPPALCNLSFKIEGGTQVGIIGRTGAGKSSVLNSLFRLTPLRAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLFEGLLRDNLDPFKMNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLRSSKVLCLDECTASVDIQTASLLQKTISSECKGMTVVTIAHRISTVINMDNILILDHGNLAEQGNPQILLKDGTSIFSSFVKASSL* 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2300 1474 Gene3D - 607 870 IPR027417 -
Psa5g2300 1474 SUPERFAMILY ABC transporter transmembrane region 281 584 IPR036640 GO:0005524|GO:0016021
Psa5g2300 1474 SMART AAA_5 650 824 IPR003593 -
Psa5g2300 1474 SMART AAA_5 1263 1447 IPR003593 -
Psa5g2300 1474 Gene3D - 1223 1471 IPR027417 -
Psa5g2300 1474 CDD ABCC_MRP_domain2 1235 1454 - -
Psa5g2300 1474 CDD ABC_6TM_MRP7_D2_like 914 1214 - -
Psa5g2300 1474 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 847 IPR003439 GO:0005524
Psa5g2300 1474 Gene3D ABC transporter type 1, transmembrane domain 268 592 IPR036640 GO:0005524|GO:0016021
Psa5g2300 1474 Gene3D ABC transporter type 1, transmembrane domain 880 1221 IPR036640 GO:0005524|GO:0016021
Psa5g2300 1474 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1470 IPR003439 GO:0005524
Psa5g2300 1474 CDD ABCC_MRP_domain1 620 823 - -
Psa5g2300 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 834 IPR027417 -
Psa5g2300 1474 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 915 1202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g2300 1474 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1454 - -
Psa5g2300 1474 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g2300 1474 SUPERFAMILY ABC transporter transmembrane region 911 1219 IPR036640 GO:0005524|GO:0016021
Psa5g2300 1474 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Psa5g2300 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1231 1461 IPR027417 -
Psa5g2300 1474 ProSitePatterns ABC transporters family signature. 1373 1387 IPR017871 GO:0005524
Psa5g2300 1474 Pfam ABC transporter transmembrane region 294 564 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g2300 1474 Pfam ABC transporter transmembrane region 916 1164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g2300 1474 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 203 1454 - -
Psa5g2300 1474 CDD ABC_6TM_MRP7_D1_like 295 584 - -
Psa5g2300 1474 Pfam ABC transporter 1255 1401 IPR003439 GO:0005524
Psa5g2300 1474 Pfam ABC transporter 641 773 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2300 Psa-Chr5 178356905 178375614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2300 640 864 Calmodulin-binding Proteins AT2G36910 28.216 7.23e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2300 K05674 - gmx:100814181 2404.79