Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2284 ATGATTGCTGCCTGTCATCCGCTTGTTTCCCCATTTGAAAAGACTGACACGACCCCTGTCTCGTTAGAAGCTATTGGTTATATCAGATTCTTTCAGATACAAATTGAGGCTCTTAGCCTACCATACTTGAGCAATGGACCTGGAAACACAAGACAACCATATTCAGTTCAAAGAGATAAGAATTGTTTATTTCTTAAAGATCCTGGTATGGAGTTGGCCAAATTATGTGTTAGTGAAAATGTTCCAGTTGTTCCAATCCCAGGTCCTTGTGCTTTGTTTCTCGAAGAGGGTTCATCAATTTTTGGTGATACAAGGAAATGTGTTATTGCTCGAGAAATGACAAAGTTTCATGAAGAGTTTTGGCGCGGATCACTTGGTGAAGCCAACCATGTATTTTCTACTCATCTGCCAAAAGGAGAACTTACCATATTGATTGAAGGGCAAGAAAATTCTAAAGCTGAACCTCCGTCTGACACAGAACTTGAGAATGAGCTAAGAGGATTAATTGAAAATGGTGAGAGTCTTTCCACGGCTGTTAAGCTGGAACAGCTTGTGCTCAGGAGGTTGAAACAGAGTGAAATTGTGGCACTCATAAGTGATGCTGGAACCCCGGGTATAAGTGATCCTGAGTTACATCCAAAACCAGAAACCATGGGGCGTATGCATAGTGGTGGTAAGGGTATATCCTCCTCCGCTTTGCCATACAAGCGAACTTCTCCTAGCTGGCTCAAGATCTCATCACAAGATGTTGATGAAAATATTTGCAAGTTTGCTAAGAAGGGTTTGACTCCTTCTCAGATCGGTGTTATTCTCCGTGATTCTCACGGTATTGCTCAGGTCAAGAGTGTTACCGGAAACAAAATCCTCCGCATTCTCAAAGCTTACGGACTTGCTCCTGAGATTCCTGAGGATCTATACCATTTGATTAAGAAGGCACTTTCGATCCCCAAGCATATAGAGAGGAGCAGGAAGGACAAGGACTTTAAGTTCAGGCTCATTCTTGTTGAGAGCAGAATCCATAGGCTTGCTCGTTATTACAAGAAAACTAAGAAACTTCCCCAGCAAACCGAGCCATGA 1077 0.4253 MIAACHPLVSPFEKTDTTPVSLEAIGYIRFFQIQIEALSLPYLSNGPGNTRQPYSVQRDKNCLFLKDPGMELAKLCVSENVPVVPIPGPCALFLEEGSSIFGDTRKCVIAREMTKFHEEFWRGSLGEANHVFSTHLPKGELTILIEGQENSKAEPPSDTELENELRGLIENGESLSTAVKLEQLVLRRLKQSEIVALISDAGTPGISDPELHPKPETMGRMHSGGKGISSSALPYKRTSPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAYGLAPEIPEDLYHLIKKALSIPKHIERSRKDKDFKFRLILVESRIHRLARYYKKTKKLPQQTEP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2284 358 Gene3D - 252 299 - -
Psa5g2284 358 SUPERFAMILY Tetrapyrrole methylase 64 145 IPR035996 GO:0008168
Psa5g2284 358 Gene3D - 163 212 IPR014777 GO:0008168
Psa5g2284 358 SMART Ribosomal_S13_N_2 218 277 IPR012606 GO:0003735|GO:0005840|GO:0006412
Psa5g2284 358 SUPERFAMILY Tetrapyrrole methylase 183 210 IPR035996 GO:0008168
Psa5g2284 358 SMART Ribosomal_S15_2 287 353 IPR000589 GO:0003735|GO:0005840|GO:0006412
Psa5g2284 358 SUPERFAMILY S15/NS1 RNA-binding domain 283 354 IPR009068 -
Psa5g2284 358 CDD Ribosomal_S15p_S13e 287 355 IPR000589 GO:0003735|GO:0005840|GO:0006412
Psa5g2284 358 Pfam Ribosomal S13/S15 N-terminal domain 218 277 IPR012606 GO:0003735|GO:0005840|GO:0006412
Psa5g2284 358 Pfam Ribosomal protein S15 291 350 IPR000589 GO:0003735|GO:0005840|GO:0006412
Psa5g2284 358 Gene3D - 86 153 IPR014776 GO:0008168
Psa5g2284 358 Gene3D - 300 357 - -
Psa5g2284 358 PANTHER 40S RIBOSOMAL PROTEIN S13 218 354 - -
Psa5g2284 358 PANTHER RIBOSOMAL PROTEIN S15P/S13E 218 354 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2284 Psa-Chr5 177681371 177683667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2284 218 353 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 88.971 8.39e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2284 K02953 - bvg:104898292 253.832