LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2283	ATGTTTATCGACGAGTTCATACCAGCATTGGAAGGAGGCCAAGGCATCTGCTATACACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGATTAACATTCACTTTTTTCACAGAATAATGAATGCATATAGTACTGGTCAACGAAAGCGTCAAAAGATTCAACATCATGGTTCAACTGAAGATCATGTTAGAAAGGAGAAATTAGGTGACATGATTGCTGTCTGTCATCCGCTTGTTTCCCCATTTGGAAAGACTGACACGACCTCTGTCTCGTTAGAAGCTATTAGTTATATAAGATTCTTTCAGATACAAATTGAGGCTCTTAGCCTACCATACTTGAGCAATGGACCTAGAAACACAAGACAACCACATTCAGTTCAAGGAGATAAGAATTGTTTATTTCTTAAAGATCCTGGTATGGAGTTGGCCAAATTATGTGTTAGTGAAAATGTTCCAGTTGTTCCAATCCCAGGTCCTTGTGCTTTGGTATCTGCTCTTTCTGCCTCGGGTTTATCACTTATGAATTTACATTTGTTGTTTCTCGAAGAGGGTTCATCAATTTTTGGTGATACAAGGAAATGTGTTATTGCTCGAGAAATGACAAAGTTTCATGAAGAGTTTTGGCGCGGATCACTTGGTGAAGCCAACCATGTATTTTTTACTCGTCTGCCAAAAGGAGAACTTACCATATTGATTGAAGGGCAAGCAAATTCTAAAGCTGAACCTCCGCCTGACACAGAACTTGAGAATGAGCTAAGAGGATTAATTGAAAATGGCGAGGGTCTTTCCACGGCTGTTAAACTGATGATTCTAGTTAGCAGCAGATTCTTCCTGGAGGAACACGAACTAGATAATCGTCACCCGCAGCATCTGAAACCCGATCTTTATCTCGTCGGAACACCGATTGGAAATCTTGAAGACATCACATTCAGGGCTTTTCGAGTGTTGAACTCGGAAGATATTATACTATCCGAAGACATAAGGAACTCTGGGAAATTGATTCATCACTACAACATCAAAACACCCCTGGGAACAACTTGTGCTCAGGAGGTTGAAACAAGTTATGATGTAATCATTATCCTCCACAAGGACAAACTTCCGCTTCTCTTCTCATCAGAAGTTGGCCATGGAACTCAAGTTGAAAAAGGACATGATAGCAGGTGCTTCCAACCTCTTTGCTCACAAACTCAACACAGCGTGATATCCTCTTGCAATAACAATGCAACAACCTTTTTCATTGACCTCCATTATATAAATCGAGTCACTAAGGCAGCTGAACGTAAGCTCGAAAATCGTCTTCAATTTGAACACTTCACCGGCGCGGTAGAGTTTCATCCAAAACCAGAAACCATGGGGAGTATGCATAGTGGTGGTAAGGGTATATCCTCCTCCGCTTTGCCATACAAGCGAACTTCTCCTAGCTGGATCAAGATCTCTTCACAAGATGTTGATGAAAATATTTGCAAGTTTGCTAAGAAGTGTTTGACTCCTTCTCACATCGGTGTTATTCTCCGTGATTCTCACGGTATTTCTCAGGTCAAGAGTGTTACCGAAAACAAAATCCTCCGCATTCTCAAGAAGGCAGTTTTGATCCGCAAGTATATCGAGAGGAGTAGGAAGGACAAGGACTTTAATTTCAGGCTCATTCTTGTTGAGAGCAGAATCCATAGGCTTGCTCGCTATTACAAGAAAACTAAGAAACTTCCCCAGCAAACTGAGCCATAA	1728	0.412	MFIDEFIPALEGGQGICYTHPENLPGAKKDGINIHFFHRIMNAYSTGQRKRQKIQHHGSTEDHVRKEKLGDMIAVCHPLVSPFGKTDTTSVSLEAISYIRFFQIQIEALSLPYLSNGPRNTRQPHSVQGDKNCLFLKDPGMELAKLCVSENVPVVPIPGPCALVSALSASGLSLMNLHLLFLEEGSSIFGDTRKCVIAREMTKFHEEFWRGSLGEANHVFFTRLPKGELTILIEGQANSKAEPPPDTELENELRGLIENGEGLSTAVKLMILVSSRFFLEEHELDNRHPQHLKPDLYLVGTPIGNLEDITFRAFRVLNSEDIILSEDIRNSGKLIHHYNIKTPLGTTCAQEVETSYDVIIILHKDKLPLLFSSEVGHGTQVEKGHDSRCFQPLCSQTQHSVISSCNNNATTFFIDLHYINRVTKAAERKLENRLQFEHFTGAVEFHPKPETMGSMHSGGKGISSSALPYKRTSPSWIKISSQDVDENICKFAKKCLTPSHIGVILRDSHGISQVKSVTENKILRILKKAVLIRKYIERSRKDKDFNFRLILVESRIHRLARYYKKTKKLPQQTEP*	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2283	575	Gene3D	-	281	378	IPR014777	GO:0008168
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	181	270	-	-
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	137	174	-	-
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	281	357	-	-
	Psa5g2283	575	SUPERFAMILY	Tetrapyrrole methylase	135	233	IPR035996	GO:0008168
	Psa5g2283	575	SUPERFAMILY	S15/NS1 RNA-binding domain	518	571	IPR009068	-
	Psa5g2283	575	Gene3D	-	486	531	-	-
	Psa5g2283	575	SUPERFAMILY	Tetrapyrrole methylase	294	344	IPR035996	GO:0008168
	Psa5g2283	575	SMART	Ribosomal_S13_N_2	452	511	IPR012606	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g2283	575	CDD	bHLH_AtbHLH_like	64	110	IPR045239	-
	Psa5g2283	575	Pfam	Ribosomal S13/S15 N-terminal domain	452	511	IPR012606	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g2283	575	Gene3D	-	178	238	IPR014776	GO:0008168
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	281	357	IPR008189	GO:0008168
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	181	270	IPR008189	GO:0008168
	Psa5g2283	575	PANTHER	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	137	174	IPR008189	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2283	Psa-Chr5	177648850	177651714	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2283	452	570	Cytoplasmic Ribosomal Protein Gene Family	AT4G00100	73.529	2.28e-59	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2283	K02953		-	bvg:104898292	196.052