Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2281 ATGACGATGCTACCTGGTTTGCAATACAATATCAATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAGCCTATAGAAGTGTTTTACATTTTGCAAAATCACGATATGTGCAACTTCACCGAAGTTCCTGTTAACCAGCCACGAGATGGATCGGTGCATCTGTTTAATAAAAGAGTCATGCGTTTCTTCCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCAGAAGGACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGCAGAGAACCCTAGTTTCCGAAGGCGAAGTTATTGGATGTTGAACCCGGAATATGAACATGTTGTTTTTGTGCATTACAGAGAAACAAATGAGGGGACATCCAATTCTAGTCCTGTCACACAATTGTCAGCATTTAGTCAGAGTCATAGCTCATATACTCCTCAAAACCCTGAGACAACATCAATAGCAGGTGATTCATGTGAACCCGATCAGAATTTCTCAAGCCCTCCTGGGTATTTAGAAGTTACCTCTGGTATCATGAATAATGGAGTGGATAACATGGAGAAAACAAATGCACAAGCTTTGCACCAGTTGGAGGAACAGTTAAGTTTGAAGGAGAAAACAGATGCACAAGCTTTGCGCCAGTTGGAGGAACAGTTAAGTTTGAACGAGGGCAGCTTCAAAGAAACTTGTCCCTTTTATAGTGAGCATGAAATACCACATGGAATTTCTGTTGCCTTCTCTGGACCAGATGATCATAAACAACCATACGAGGGATATAATGGAGCAAAAGATGGAAGTGGCAATCATTATCATGAATTACTTGACCATGATTGCCCTGGTGGGCAAGAACAACCCTTATCTTGGACAGAGATGCTGGAAACATGCAAGTTCTCATCAGTGAGGAAGTTACCAGAACAACATACATTTGAGGCATATGAAAATGAAAAGTCACTATCTTCCTCAGGAAGAGAAATGATTGCCAACCAGGAAATCAATTATCCGCTAAACCTCAACACTGTCTTTGCATTTCCTCAAGATGTTGGTGGAGTAAAAAAATATCCATATTCTTCGGTTGAAACTCAAGGAACTACTTCTGACTACTATGAAACACTGATTGACCAAAGCCAAATTCAGGAACCTCGGGATGCATATGCATGCTTGACTGTTGGGCAGAAACAGAAATTTACAATTACAGCTGTCTCCCCGGAATATTGTTATGCCACTGAGGCAACAAAGGTGTTCATTATTGGATCATTTCTCTGCCCTCCCTCGGATTCTACCCGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATGATTCAGGCTGGCGTAATGTGTTGTGAGGCGCCATCCAATCTTCTTGGAAAGGTTACTCTGTACATTACTTCAGGAAATAAGGAACCATGCAGTGAAATCAAAGAGTTTGAGTTTCGTAGTAAGACCACTAGTTGCACTCATTGTAATATTTTGGAAACAGAAGCTGCTAGAAGTCCAGAAGAGCTGTTATTACTTGTTCAATTTGCAGAAATGCTCCTTTCTGCTTCTACTACGAGGAATGACAGCACAAAATCTGGAAGTCATCTTTCAACAGAACAGAAAGTAGATCACGATTCATGGAGCCATATTAGAGAAGCTATCCTAGTTGGCAATGGAACTTCATCCGGTACTATTGATTGGCTTCTTCAAGAGCTGCTGAAGGATAAACTGCAGCACTGGCTTTCTTGCAGATCCAATGAACGAGATGAAAGAGAAGGCTGTTCTTTGTCCTGGAAAGAGCAAGGGATTATACACACGGTTTCTGGATTGGGTTTCGAGTGGGCCCTGAACCCCATTCTCAGTTATGGCGTGGTTGTTAATTTCCGTGATATCAACGGTTGGACTGCCCTTCATTGGGCTGCACGATTTGGAAGGGAAAAAATGGCTACTTCGCTTATCACTGCCGGTGCATCTGCTGGAGCAGTGACTGATCCAAGTTCACAAGATCCAAATGGTCTAACTGCCGCATCTATTGCGGCCAGCAATGGCCACAAGGGTCTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGCCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTTCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGCAATGTGTCTAATAAATATTTTGAAGCCAGTGATGACGAGGTTTCACTAAAAAAAACCTTGGGTGCTGTCAGAAATGCAGTTCAGGCAGCTGCACTGATACAGGCTGCTTTTCGTGCACATTCTTTCAGAAAACGGAAAGAGAGAGAAAGTGCACGTGATTACAGAAATGCAACTCAGGCAGCTGCACGGATACAGACTGCTTTCCGTGCACATTCTTTCAGAAAACGCAGAGAGGGAGAATGTGCACATGATTACAATTCAGCTGCCTTGTCAATTCAGAAGAACTATCGAGGTCGGAAAGGTCGCAGAGAGTTCTTAGTTTTGCGCCATAAAGTTGTTAAGATACAGGCTCATGTGCGGGGTTACCGGGCTCGGAAGCAATACAAGGTAATGATATGGGCAGTTGGAATATTGGACAAGATTGTGCTAAGATGGCGGAGAAAACGAGATGGTTTGCGAAGATCTCTCGAGGAAATAGATTCGAAAGAAGAAAGTGATGATGAAGATTTTCTAAAGGTGTTCAGGCAAGTGAAAGTACATGAATCAATTAAAAAGGCTTTGGCTCGGGTGCATTCTATGGTCCCATCTACACGTGCTCGTCAGCAATATAATCGCTTGCTTCAGATGCATGAGGAAGCCAAGGCTGAACATGGCAATAGGCATGATGAAACTCTGTCATCAACTTCTGTAGAGGGTCCTTGGATTATTGAAGATGATGACTTATATCAATTTCCTTTGGAAACTCAGTTATCAACTTCTATAGAGGGTCCTTGGATTATAGAAGATGATGATTTATATCAATTTCCTTTCGAAACTCCGTTATCAACTTCTGTAGAGGGTCCTTGGATTATTGAAGATGATGGTTTATATCAATTTCCTTGGGAAACGCTCTAG 3078 0.4224 MTMLPGLQYNINDLFQEAKKRWLKPIEVFYILQNHDMCNFTEVPVNQPRDGSVHLFNKRVMRFFRKDGHNWRKKKDGRTVAEGHERLKVGNVEALNCYYAHGAENPSFRRRSYWMLNPEYEHVVFVHYRETNEGTSNSSPVTQLSAFSQSHSSYTPQNPETTSIAGDSCEPDQNFSSPPGYLEVTSGIMNNGVDNMEKTNAQALHQLEEQLSLKEKTDAQALRQLEEQLSLNEGSFKETCPFYSEHEIPHGISVAFSGPDDHKQPYEGYNGAKDGSGNHYHELLDHDCPGGQEQPLSWTEMLETCKFSSVRKLPEQHTFEAYENEKSLSSSGREMIANQEINYPLNLNTVFAFPQDVGGVKKYPYSSVETQGTTSDYYETLIDQSQIQEPRDAYACLTVGQKQKFTITAVSPEYCYATEATKVFIIGSFLCPPSDSTRACMFGDVEVPAEMIQAGVMCCEAPSNLLGKVTLYITSGNKEPCSEIKEFEFRSKTTSCTHCNILETEAARSPEELLLLVQFAEMLLSASTTRNDSTKSGSHLSTEQKVDHDSWSHIREAILVGNGTSSGTIDWLLQELLKDKLQHWLSCRSNERDEREGCSLSWKEQGIIHTVSGLGFEWALNPILSYGVVVNFRDINGWTALHWAARFGREKMATSLITAGASAGAVTDPSSQDPNGLTAASIAASNGHKGLAGYLAEADLTSHLSSLTLEKCEVSKDSSELEAELTVSNVSNKYFEASDDEVSLKKTLGAVRNAVQAAALIQAAFRAHSFRKRKERESARDYRNATQAAARIQTAFRAHSFRKRREGECAHDYNSAALSIQKNYRGRKGRREFLVLRHKVVKIQAHVRGYRARKQYKVMIWAVGILDKIVLRWRRKRDGLRRSLEEIDSKEESDDEDFLKVFRQVKVHESIKKALARVHSMVPSTRARQQYNRLLQMHEEAKAEHGNRHDETLSSTSVEGPWIIEDDDLYQFPLETQLSTSIEGPWIIEDDDLYQFPFETPLSTSVEGPWIIEDDGLYQFPWETL* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2281 1025 ProSiteProfiles IQ motif profile. 836 860 IPR000048 GO:0005515
Psa5g2281 1025 SMART iq_5 812 834 IPR000048 GO:0005515
Psa5g2281 1025 SMART iq_5 753 775 IPR000048 GO:0005515
Psa5g2281 1025 SMART iq_5 835 857 IPR000048 GO:0005515
Psa5g2281 1025 SMART iq_5 784 806 IPR000048 GO:0005515
Psa5g2281 1025 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Psa5g2281 1025 SMART CG_1_2 14 132 IPR005559 GO:0003677
Psa5g2281 1025 CDD IPT 406 491 - -
Psa5g2281 1025 Gene3D - 572 704 IPR036770 -
Psa5g2281 1025 Gene3D Immunoglobulins 400 495 IPR013783 -
Psa5g2281 1025 SUPERFAMILY E set domains 406 490 IPR014756 -
Psa5g2281 1025 SUPERFAMILY Ankyrin repeat 607 699 IPR036770 -
Psa5g2281 1025 SMART ANK_2a 636 665 IPR002110 GO:0005515
Psa5g2281 1025 SMART ANK_2a 675 704 IPR002110 GO:0005515
Psa5g2281 1025 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Psa5g2281 1025 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Psa5g2281 1025 Coils Coil 924 944 - -
Psa5g2281 1025 Gene3D - 812 860 - -
Psa5g2281 1025 ProSiteProfiles IQ motif profile. 754 783 IPR000048 GO:0005515
Psa5g2281 1025 Pfam Ankyrin repeats (3 copies) 626 700 IPR002110 GO:0005515
Psa5g2281 1025 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Psa5g2281 1025 Pfam IQ calmodulin-binding motif 838 857 IPR000048 GO:0005515
Psa5g2281 1025 Pfam IQ calmodulin-binding motif 815 833 IPR000048 GO:0005515
Psa5g2281 1025 ProSiteProfiles IQ motif profile. 813 842 IPR000048 GO:0005515
Psa5g2281 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 864 IPR027417 -
Psa5g2281 1025 ProSiteProfiles Ankyrin repeat region circular profile. 636 662 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING PROTEIN 3 216 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING PROTEIN 810 972 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING PROTEIN 217 781 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING PROTEIN 783 811 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 783 811 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 217 781 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 216 - -
Psa5g2281 1025 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 810 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2281 Psa-Chr5 177508177 177517170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2281 7 973 CAMTA Transcription Factor Family AT1G67310 46.752 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Psa5g2281 CG-1 2.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2281 K21596 - gmx:100791430 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2281 5 177508177 177517170 Psa5g2281 5 177508177 177517170 ECH