Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2263 ATGGAGTGGAATGCGAAATCTCCGGGGCAATGGGACTGGGAAAACTTATTCTTCGTGAATTCAAAACCAGCAGAAAATCACAAGTCTCAATCTACTGATTGGAGTGCGGAGACAGATCGTGAAACCAATGTTGGAATGTTGTTTCCATCAAGTGGTAGTGGCTATTCCGCGTCAAAACTGCTACACGCGTCTTCCTCGAGGAGCTCAAAATCTGCTTCCAATAATTCATCGTCAAACGGGGAGAGCAAGACATCTATGTCAACTCGGGAAGGCTCTCAAGACGATTCCACCGCTAAGAAAGAATTGTCTAAAGGAGATCCAGTTGAAACTTCTCCGGCAGCCGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTCCCCTGGAAGCCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCCGCGGCTCCTCCTTCGAGCAGAAAGAAAGGTAAATCGGGTAGTCCGAACTTGCTACATTGCTGCCAGGTGGAAGGTTGTGGCTTCGACCTCTCTTCTGCTAAAGATTACCATCGAAAACATAGAGTTTGTGAAAGCCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATTCTCTATCGGAGTTTGACGAGAAAAAAAGAAGCTGCAGACGTCGTCTCTCAGATCACAATGCAAGACGCCGCAAACCTCAGCCTGGAGCAATTCAACTGAATCCATCATCTCTTTCTTCATCGCCCTATGATCAAAGACAAACAATGGGCCCATTTGCTTTTCCGAGGAACGCAAATTTAGCATGGCAAGACATTCATAACAGCAAACTCCCCGAAACACAAGATTTTATGCTGAAACCTCCAAAAGCCTTTAACAAGATTGTCACCATGCTTTCTGATGACTCCAAAGGCATAGGATCCAGGAGTACATTTCCAGGTATAGAAGATCCAACTACCTTGTCTGATCCAACTGCTACGCAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAGTCCCTCTCTTTAGAACACTCGAATCGGCCAAGCGGGGCAACTCATTCCACAGCACATGCAACTGCTAACCGCATGCCTTTTCCTTCATCGGAATACTGGCACACTGATCCGCAACACGCGAACAACTCCAGCGGCTGTATCTCGTTCTCAGCTTACGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTCAGCGCACCGTTCGAGTCGAGTTTCCCTTGCAACCAGCTGGATTAA 1302 0.4677 MEWNAKSPGQWDWENLFFVNSKPAENHKSQSTDWSAETDRETNVGMLFPSSGSGYSASKLLHASSSRSSKSASNNSSSNGESKTSMSTREGSQDDSTAKKELSKGDPVETSPAAEPLLTLKLGKRFYFEDVSPGSHSKKASSSAVPAAPPSSRKKGKSGSPNLLHCCQVEGCGFDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPGAIQLNPSSLSSSPYDQRQTMGPFAFPRNANLAWQDIHNSKLPETQDFMLKPPKAFNKIVTMLSDDSKGIGSRSTFPGIEDPTTLSDPTATQDVNRALSLLSTNSWGAYDTKSLSLEHSNRPSGATHSTAHATANRMPFPSSEYWHTDPQHANNSSGCISFSAYDNSNRFQDFQLFSAPFESSFPCNQLD* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2263 433 MobiDBLite consensus disorder prediction 245 260 - -
Psa5g2263 433 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Psa5g2263 433 MobiDBLite consensus disorder prediction 24 115 - -
Psa5g2263 433 Pfam SBP domain 167 240 IPR004333 GO:0003677
Psa5g2263 433 MobiDBLite consensus disorder prediction 133 160 - -
Psa5g2263 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 432 - -
Psa5g2263 433 Gene3D - 159 228 IPR036893 GO:0003677|GO:0005634
Psa5g2263 433 MobiDBLite consensus disorder prediction 225 260 - -
Psa5g2263 433 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Psa5g2263 433 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 432 IPR044817 GO:0003677
Psa5g2263 433 MobiDBLite consensus disorder prediction 24 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2263 Psa-Chr5 176342234 176346508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2263 1 392 SBP-box Gene Family AT5G43270 39.100 7.63e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa5g2263 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2263 - - gmx:100796013 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2263 5 176342234 176346508 Psa5g2263 5 176342234 176346508 ECH