Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2250 ATGGGAAGAGCACCTTGTTGTGAGAAAGTGGGTTTGAAGAGAGGAAGGTGGACAGCAGAGGAAGATGAAATTTTGACCAAATACATTAAGGCCAATGGAGAAGGTTCTTGGAGGTCATTACCCAAAAATGCAGGGTTGCTTAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAACTATTTGAGAGATGATCTCAAAAGAGGAAATATTTCTGCTGAAGAGGAAACTCTCATTGTCAAATTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCACTTACCAGGAAGAACAGACAACGAGATTAAAAACTATTGGAACTCTCATTTGAGTAGAAAAGTTTACACTTTTCGTGGAACAACAACAAATTACGATAATACAAAAGAGATTCCTTCACAGGGAATCTTAGTTAATACACCTCCCAAAAGAAAAGGTGGTAGAATTAGCAACAAGGCTATGAAGAAAAATAAAGACTATACTCAAAGAGTTTTCAAAAGTCCGAATGGACTAACTTCGTTGGGTGACGAAGATAGCCTAAATGGACTTAAGTTGCCATGCATTGTCGGTGAAAATATTGAAACTGATTGCGATTTTATGTTAGGGTCGGATCAAAATCAAAATCCAAATCCAAAGGATATTAATGATGATGAATCGTTGGATTTTAATGATATTGTTATAGACACATGCGAGGTGGAAAAAGAAAGAAAAAATAATGATAATATGGTGGTAAGAGATGAAAGAGTTGGGGACAAAGGTACAAGTAGTAACAAGTTGGGAACACATGACACTGAGAATAATAGTGTGACAAGTCGAAGTTTGAATGATTTGGGTTTGGATGATAACTTGGATTGGGATAGTGTTATGCCTTTGTTGAATAATAAAGGACAATCTTTGTCATGGGAGTTAAGTGAAAACATGTTAACTTGGTTGGGGGATGATGATGAATGGGAGAAGGATTTTCACAAGTATACAGAGATTGATCCTGATCAGAAGAAAAATGATATATTTTCTTGGTTTTAA 1026 0.3606 MGRAPCCEKVGLKRGRWTAEEDEILTKYIKANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDLKRGNISAEEETLIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYTFRGTTTNYDNTKEIPSQGILVNTPPKRKGGRISNKAMKKNKDYTQRVFKSPNGLTSLGDEDSLNGLKLPCIVGENIETDCDFMLGSDQNQNPNPKDINDDESLDFNDIVIDTCEVEKERKNNDNMVVRDERVGDKGTSSNKLGTHDTENNSVTSRSLNDLGLDDNLDWDSVMPLLNNKGQSLSWELSENMLTWLGDDDEWEKDFHKYTEIDPDQKKNDIFSWF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2250 341 MobiDBLite consensus disorder prediction 239 254 - -
Psa5g2250 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g2250 341 CDD SANT 16 61 IPR001005 -
Psa5g2250 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g2250 341 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa5g2250 341 MobiDBLite consensus disorder prediction 239 273 - -
Psa5g2250 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g2250 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g2250 341 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 320 - -
Psa5g2250 341 Gene3D - 11 67 - -
Psa5g2250 341 CDD SANT 71 112 IPR001005 -
Psa5g2250 341 Gene3D - 71 116 - -
Psa5g2250 341 SMART sant 66 114 IPR001005 -
Psa5g2250 341 SMART sant 13 63 IPR001005 -
Psa5g2250 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g2250 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g2250 341 MobiDBLite consensus disorder prediction 255 273 - -
Psa5g2250 341 PANTHER MYB TRANSCRIPTION FACTOR 2 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2250 Psa-Chr5 175612273 175614698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2250 1 183 MYB Transcription Factor Family AT5G49330 61.421 1.70e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g2250 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2250 K09422 - gmx:100793350 300.827