Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2248 ATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTACCAAATTCATCTTTAGAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCAGCGGTTCTCATTGATAAAGATGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTAAATTTCACGAAAATAGTTTCATTAGCACCCGAGTATGATGATAATGCAGCGGTTCTCATTGATAAAGAAGGAAATCCAAAGGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTAAATTTCACGAAAATAGTTTCATTAGCACCCGAGGTATTATAA 438 0.3539 MCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIDKDGNPKGTRIFSAIARELRQLNFTKIVSLAPEYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLAPEVL* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2248 145 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Psa5g2248 145 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 1 100 - -
Psa5g2248 145 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 101 143 - -
Psa5g2248 145 Gene3D Ribosomal protein L14 1 101 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 SUPERFAMILY Ribosomal protein L14 101 145 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 Pfam Ribosomal protein L14p/L23e 102 145 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 Pfam Ribosomal protein L14p/L23e 1 101 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 101 143 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 100 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 Hamap 50S ribosomal protein L14 [rplN]. 4 145 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 Gene3D Ribosomal protein L14 102 145 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 SUPERFAMILY Ribosomal protein L14 1 101 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g2248 145 TIGRFAM rplN_bact: ribosomal protein uL14 1 101 IPR005745 GO:0003735|GO:0006412|GO:0015934
Psa5g2248 145 SMART Ribosomal_L14_2 1 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2248 Psa-Chr5 175559235 175559791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2248 14 99 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 37.209 3.50e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2248 K02874 - gmx:3989333 180.259