Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2243 ATGTTAATGATGGATGTTTCTGAGGTTGAAGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATGCAGAAATGTGCAGACGTCTATCTGCAATATATTGTAAAATATTGTCCCTTTTTCCTGCCTTAGAGGCAGCTAAGCCGAGGAGCAAATCTGGAATTCAGGCATTATGTTCGCTGCATGTAGCGTTAGAGAAGGCGAAGAATGTACTTCAGCACTGCTCGGAGTCTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTGTAAAATTTGAGAAGGCCAAGTGTGCTCTTGTAGATAGTCTTAAGCTAGTGGAAGATATTGTTTCCCAATCCATTGGGTGTCAGATTGATGAAATTGTAAATGAAATTGCTGGTATAGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTCCAGCAGGATAGAAAGTTTAGCGACTCTAATGACTGTAGTGAACTTGAGTGTTTCCATATGGCTGCTACTAGACTTGGAATCACATCTTCCAGAGCAGCTCTCACTGAAAGAAGAGCTCTGAAAAAGCTCATTGAAAGGGCTCGGGGCGAGGAAGACAAGAGGAAAGAATCAATTATTGCGTATCTTCTACACCTTATGAGGAAATACTCCAAGATATTTAGAAATGAGTTCTCTGATGATAATGATTCTCAACCTTGTTCTCCCACCGTCCACAAACCTCCCGTGAACTGTGTTCCTGGTAGTCATTTTCAAGCATTTGATAGACAAATATCAAAACTTGGTTCTTTTAATTTTAATCCAAACAATAAGAAATCGGGGCAGATGCCTCTTCCTCCAGAAGAGTTAAGGTGTCCAATCTCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAGACTTATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGTCCAAAGACTCAACAGAAGCTTGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTCGTGGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTTAACTACTGGAGATTGGCGTTATCAGATTCCGATTCCACAAATTCAAGATCCGTAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCACTTGAAGAGAATGTTATCTTAGAGCAAACCGAGGGAAATGTAACTGAAAGTTTGCCAGCACAAGAAGAGGAAGACAGTGAAAAGTATCTTAGTTATGTGAAATTATTGACCAAAGGGAACAATTGGAAGAGAAAGAGTAAAATAGTAGAGCGGTTAAGGCTTTTGTTGCGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGCGGTGGCTCAGGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCAGGAATCTTATCGTTGTTGGAGGAAATGATTTCAAACACCAACTCGTACGGTTGTGCAACTGCACTTTATTTGAATCTTTCTTGCCTTGAAGAAGCCAAGCAAATGATTGGCACAAGTCAGGCCGCACAGTTCCTTATCCAGATGCTTCAAACTAAAACAGAAGTCCAGTGCAAGCTAGATGCCCTCCATGCAATCTATAATATTTCTACCGTACCCTCAAATATTCCAAACCTTCTCACATCTGGCATCATCAGTGGCCTACAATCCATTCTTGTAGGCCAGGCCGATTGCACATGGACAGAAAAATGCATAGCTGTTTTAGTTAATTTGGCCATTTCTCAAGCTGGAAGAGAGGAAATGATGTTGAATCCTGAACTCATAAGCACATTGGCTTCTATACTTGATACCGGTGAATCCCTTGAGCAGGAACAAGCTGTGTCTTGTCTTCTAATATTATGTAACAGGAGTGAGAAATGTTGTGAGATGGTCCTGCAAGAAGGCGCTATACCTGCATTGGTGTCAATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAACGAGATCATTCACCTGCTAAGGCTCAACTCTGCTCACCTGAAGTTGGTGATTTGTCCATGCCTCCTCAAGAAACGAAACCGCTATGTAAATCAATATCTAGAAGAAAAGTTGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGTTACTCTGTATACCAGTGTTAG 2298 0.4134 MLMMDVSEVEESFFAASDAKLHAEMCRRLSAIYCKILSLFPALEAAKPRSKSGIQALCSLHVALEKAKNVLQHCSESSKLYLAITGDSVLVKFEKAKCALVDSLKLVEDIVSQSIGCQIDEIVNEIAGIVFALDPSEKQVGDDLIALLQQDRKFSDSNDCSELECFHMAATRLGITSSRAALTERRALKKLIERARGEEDKRKESIIAYLLHLMRKYSKIFRNEFSDDNDSQPCSPTVHKPPVNCVPGSHFQAFDRQISKLGSFNFNPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSDSTNSRSVNSVNSCKLKGVKVVPLEENVILEQTEGNVTESLPAQEEEDSEKYLSYVKLLTKGNNWKRKSKIVERLRLLLRDDEEARIFMGANGFVEALFQFLQSAVREGNAVAQENGAMALFNLAVNNNRNKELMISAGILSLLEEMISNTNSYGCATALYLNLSCLEEAKQMIGTSQAAQFLIQMLQTKTEVQCKLDALHAIYNISTVPSNIPNLLTSGIISGLQSILVGQADCTWTEKCIAVLVNLAISQAGREEMMLNPELISTLASILDTGESLEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKAQLCSPEVGDLSMPPQETKPLCKSISRRKVGKALSFLWKSKSYSVYQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2243 765 PANTHER U BOX DOMAIN-CONTAINING 4 757 - -
Psa5g2243 765 Gene3D - 10 108 IPR036537 GO:0007166
Psa5g2243 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Psa5g2243 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Psa5g2243 765 SUPERFAMILY ARM repeat 418 707 IPR016024 -
Psa5g2243 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Psa5g2243 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Psa5g2243 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Psa5g2243 765 CDD RING-Ubox_PUB 283 325 IPR045210 -
Psa5g2243 765 SMART arm_5 455 499 IPR000225 GO:0005515
Psa5g2243 765 SMART arm_5 501 539 IPR000225 GO:0005515
Psa5g2243 765 SMART arm_5 540 581 IPR000225 GO:0005515
Psa5g2243 765 Gene3D - 427 604 IPR011989 -
Psa5g2243 765 SUPERFAMILY RING/U-box 276 354 - -
Psa5g2243 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 757 - -
Psa5g2243 765 Gene3D - 605 713 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2243 Psa-Chr5 175314598 175318842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2243 4 764 U-box Gene Family AT1G24330 64.570 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2243 - - gmx:100804344 1244.18