Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2240 ATGGTGATGATGAATTCCGGTTCAGCCTTGAGGAAACAGGTTTTTCCAATTGATTTCGAAACAGAAATGTCACAGCTTCTGGTAGATGCTGCTCATCATGGTGACACTGATACTGCTATGGAATGTGTAGCCAATTCATCTGTGGATGTTAACTTTATCGGAACCGTGATGTTGAAGTCCAAAACGACGGAGATTTCGCTTCATGATGAGTCGCCTCATCGAGTTAACTCGGTGTATCAGGAGTTTAAAACTGAAGTCACTCCTCTGTTTTTGGCTGCACATTCCGGAAACTTGACTCTCCTTCGTAAATTAATGAATGTGGGAGCTAATGTGAATGTGAGATTGTTCCGTGGCTATGCTACAACAGCGGCGGTTAGAGAAGGACACCTTAATGTATTGGAGGTTCTTATCAATGGTGGAGCTTCACAGCTTGCATGTGAAGAGGCTTTACTCGAATCAAGCTATGTCGGACGGGCTAGATTTGCTGAACTGCTTATGCAGTCCAATATGATCCGTCCTCGGGTTGCAGTTCACGCCCTTGTCTCTGCTTGTTGCAGAGGATTCATTGAGGTTGTTGATGTACTCATCAAGCAAGGAGTTGATATCAATGCAATCGATAGGATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACCAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTGAGCAGGCAGATAAATGTTGTTAAACTACTGTTGCAGGTTGGTGTAAGACTTGATATCAAGGTTAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAACTTCGTGTTGGTGTCGGACTAGCCGAGCCTTATCCGATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAATATGCTTCTCCATTACCTCTCACCTAATAGTTTTCACATTGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTAAATATACTTCTCAATAATGGGGTTGATACAGAATTAGCACTTCAAACTACTGAAGAAACGAATCTACACCCTATTCACATGGCTGCACGGCTTGGATTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCACAAACAAAATTTGGTGACACGGCATTGATGATTTGCACCAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTCGGTCATTGCGCAACTTCAACAGCAATTTCTATTCATTGGACTAAAGACTATCATAGAGCTGTTTTGGATATAATTAGAGCCGGAAAGGTTGTTAAATCAAGCAATGCGTCTAGATTTTCAGCTTTGTTATTTGCCACTCGCGCGAACGACATAGAGGCTTTGAAAAAACTCATTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGGATGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCTTTCAAGTTGCTTCTTCATGCCGGAGCTGATGTAACCAATCTTAAAAACAAACATGGTTTAACAGCTCTTGATATCATAGATTTGAAACAAAATGGTGAAAATGTTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAGGCGAATCCTCTACACCGTGCAGCTTGTTATGGAGATATAAACAATGTTGAAAAACTACTAAAAGAAGGGAATTATGATGTGAATAGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACACGAAACAGCACTTTTACTTGCAAGAGAAAATAATGGGAAAGGAAATGCTGCAGAGAATGTGATAATGGATGAATTGGCTACAAGAGTAGTATTGTGTGGTGCGCGTGTGAAGAAACATACAAAGTGTGGTAAAGGGTTGCCACATAGGAAACAACTGGTAATGGTTGGTGCTGCTGGAATCTTACGTTGGGGGAAATCGAATAAGAGAAACGTTGTTTGTAAAGAGGCTGAGGTTGGACCAAGTGAAAAATTTCGATGGAACCGTAGGAAGAAGTTTGATGTTGATGAGGTGGGAATGTTTCATGTTGTTACAACAAAAAATAAGGAGGTGCATTTTGTTTGTGAAGGTGGGGTTGAAATGGCTGAGTTGTGGGTAAGGGGGATTAGATTAGTAACAAGAGAAGCCATATTTGGTTCTAGAGCTAATACTAGTTGA 2298 0.4003 MVMMNSGSALRKQVFPIDFETEMSQLLVDAAHHGDTDTAMECVANSSVDVNFIGTVMLKSKTTEISLHDESPHRVNSVYQEFKTEVTPLFLAAHSGNLTLLRKLMNVGANVNVRLFRGYATTAAVREGHLNVLEVLINGGASQLACEEALLESSYVGRARFAELLMQSNMIRPRVAVHALVSACCRGFIEVVDVLIKQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEELRVGVGLAEPYPITWCAVEYFESTGTILNMLLHYLSPNSFHIGRTLLHHTIICNNERALNILLNNGVDTELALQTTEETNLHPIHMAARLGLCNILQCLINGNCNLDSQTKFGDTALMICTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTAISIHWTKDYHRAVLDIIRAGKVVKSSNASRFSALLFATRANDIEALKKLIENRNINLDEQNEDGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKHGLTALDIIDLKQNGENVHKVMFEYALKKGCLNISTLAEANPLHRAACYGDINNVEKLLKEGNYDVNSFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLARENNGKGNAAENVIMDELATRVVLCGARVKKHTKCGKGLPHRKQLVMVGAAGILRWGKSNKRNVVCKEAEVGPSEKFRWNRRKKFDVDEVGMFHVVTTKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGSRANTS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2240 765 Gene3D - 151 261 IPR036770 -
Psa5g2240 765 ProSiteProfiles Ankyrin repeat region circular profile. 482 509 - -
Psa5g2240 765 SUPERFAMILY Ankyrin repeat 307 629 IPR036770 -
Psa5g2240 765 SUPERFAMILY Ankyrin repeat 26 255 IPR036770 -
Psa5g2240 765 Coils Coil 459 482 - -
Psa5g2240 765 Pfam Ankyrin repeats (3 copies) 537 618 IPR002110 GO:0005515
Psa5g2240 765 Pfam Ankyrin repeats (3 copies) 323 407 IPR002110 GO:0005515
Psa5g2240 765 Pfam Ankyrin repeats (3 copies) 449 510 IPR002110 GO:0005515
Psa5g2240 765 ProSiteProfiles Ankyrin repeat profile. 179 207 IPR002110 GO:0005515
Psa5g2240 765 ProSiteProfiles Ankyrin repeat profile. 587 619 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 84 113 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 345 374 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 553 583 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 221 250 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 587 616 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 378 407 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 448 476 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 308 337 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 482 511 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 116 145 IPR002110 GO:0005515
Psa5g2240 765 SMART ANK_2a 175 204 IPR002110 GO:0005515
Psa5g2240 765 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Psa5g2240 765 Gene3D - 532 638 IPR036770 -
Psa5g2240 765 ProSiteProfiles Ankyrin repeat profile. 378 410 IPR002110 GO:0005515
Psa5g2240 765 Gene3D - 422 531 IPR036770 -
Psa5g2240 765 Gene3D - 292 421 IPR036770 -
Psa5g2240 765 PANTHER ANKYRIN REPEAT-CONTAINING 8 759 - -
Psa5g2240 765 Gene3D - 11 150 IPR036770 -
Psa5g2240 765 ProSiteProfiles Ankyrin repeat region circular profile. 84 114 - -
Psa5g2240 765 ProSiteProfiles Ankyrin repeat profile. 482 514 IPR002110 GO:0005515
Psa5g2240 765 ProSiteProfiles Ankyrin repeat region circular profile. 587 619 - -
Psa5g2240 765 PANTHER ANKYRIN DOMAIN PROTEIN 8 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2240 Psa-Chr5 175174268 175177198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2240 452 610 Ion Channels AT2G25600 31.183 6.61e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2240 - - mtr:MTR_3g085630 1301.96