Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2229 ATGGTGAAGTACTCCCAAGAGGCCGACAATCCCACCAAATCAACGAAGGCCAGAGGCGCTGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACCGCGTTTGCAATCAGGAAGTTGCCACTCACCAAAGCCAAAAGATACTTGGAAGATGTTTTGGCCCACAAACAGGCTATTCCTTTCCGACGCTTTTGCCGTGGTGTTGGGAGAACAGCCCAAGCCAAGAACAGGCATTCCAATGGGCAAGGACGTTGGCCTGCCAAGTCTGCTAAATTTATTCTTGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCACTCTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGTCGTACTTACAGGGCTCATGGAAGAATCAATCCTTACATGTCATCTCCATGCCACATTGAGCTCATATTATCCGAGAAGGAAGAGCCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGTGCTTCATCTTAG 549 0.4681 MVKYSQEADNPTKSTKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKEPETQLATNKKKSQALRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2229 182 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa5g2229 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Psa5g2229 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Psa5g2229 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Psa5g2229 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Psa5g2229 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Psa5g2229 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Psa5g2229 182 MobiDBLite consensus disorder prediction 168 182 - -
Psa5g2229 182 MobiDBLite consensus disorder prediction 155 182 - -
Psa5g2229 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Psa5g2229 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2229 Psa-Chr5 174405700 174408120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2229 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.363 1.47e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2229 K02880 - zju:107428381 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2229 5 174405700 174408120 Psa5g2229 5 174405700 174408120 ECH
Psa5g2229 5 174405700 174408120 Psa7g1793 7 129522021 129527068 PCT