Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2194 ATGGATAATGGTTGCTTCTCTACGCCCAGGCGCGATTTTCCTGCTGGTTTACGAGTTCTTGTCGTCGATGATGATCCAACTTGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTGGCAAGACAAGCTCTAAACTTGCTTCGCGAAAGGAAAGACGGATACGATATAGTCATCAGCGATGTAAACATGCCTGACATGGACGGTTTCAAGCTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGTGCGTGCGATTATCTTCTTAAGCCTATAAGGATGAAAGAGCTGCGAAACATATGGCAACATGTTTTCAGGAAAAGGATACACGAGGTTCGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAACGGATCGGATATGTCCGAGGAGGGGAACATGTTTGCGTTAGAAGATATGACAACGAAGAAGCGCAAAGATGTAGATAGCAAGTACGACGACAGAGAATTTTTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTATGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGCAGGCTTCAGAAAGATAATGAACAAAAATCTTCGTCAAGTGGAATGAAGCATTCTGATTTACCTTTAAAAGACGTAGGAAGTTTTGGTTTTCAGAACTCGGCCGACAAGCAACAAAACGACACTTCAATTGATCGATACAACTATTCAGAAGGAACCTTACAACATCAGAACATGGAAACTAAAAGTCATGAGAGTAATCCCAAAGGAAGCGTTCCGCATTCCACAACGGTAGAAAAAGTAAAAGCTTTTGTCCCTCTTGAATCAGAAGGAAAACATGCAGCATTCCAAAGCACCATGTCGACGACACAGTATTCTTGGACTGAAATTCCAAAAGCACAGTTAAAAAAAGAACAAAAGCCACTTGTTCATCCAGAGGATAGCTTCAACCTATTGCCCTTACATGGCAAGCAGCATAACCTTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCACTCCCTCGATGGCGAAGCAAGATGTCGCTGGTTGTATAGAAACAAAACCAAGGTTTGCTGATTACAAGAAAGACTACACTAGTTCAGTGAGTTCGATGAGAAGTTCAGTTGACACCTTTCCTTTCCAACCCGGAAACCTGATGATGAATTATCAACCTTCACAACCCACTTCAGCCACAAATTTGGGATTAAAAACACAGTCATACAATAATCTCAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTTGGAGGTGAAGCTGCTTCTGCCGCGCCTTTGGACGAAGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAGCAGAATATTGGGATGCCTGAGTATTATGATCCAGGGCTTCTCACAGAAGTTCCAAACCACTTATATGAATCAGCAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1671 0.4081 MDNGCFSTPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARQALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSDMSEEGNMFALEDMTTKKRKDVDSKYDDREFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPLKDVGSFGFQNSADKQQNDTSIDRYNYSEGTLQHQNMETKSHESNPKGSVPHSTTVEKVKAFVPLESEGKHAAFQSTMSTTQYSWTEIPKAQLKKEQKPLVHPEDSFNLLPLHGKQHNLQVDQSQSIASISSTPSMAKQDVAGCIETKPRFADYKKDYTSSVSSMRSSVDTFPFQPGNLMMNYQPSQPTSATNLGLKTQSYNNLSCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQQNIGMPEYYDPGLLTEVPNHLYESADYSVIDQGLFIA* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2194 556 CDD REC_typeB_ARR-like 19 133 - -
Psa5g2194 556 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Psa5g2194 556 Gene3D - 17 195 - -
Psa5g2194 556 SMART REC_2 17 129 IPR001789 GO:0000160
Psa5g2194 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 338 530 IPR045279 GO:0009736
Psa5g2194 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 335 IPR045279 GO:0009736
Psa5g2194 556 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Psa5g2194 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Psa5g2194 556 SUPERFAMILY CheY-like 16 145 IPR011006 -
Psa5g2194 556 Gene3D - 196 257 - -
Psa5g2194 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 338 530 - -
Psa5g2194 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 335 - -
Psa5g2194 556 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Psa5g2194 556 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2194 Psa-Chr5 173113912 173117391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2194 13 264 Response Regulator Gene Family AT2G25180 56.863 4.76e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa5g2194 Response_reg 5e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2194 - K14491 gmx:100797421 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2194 5 173113912 173117391 Psa5g2194 5 173113912 173117391 ECH