Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2179 ATGTATTTATCATCCGAAAAGCCTCGTCCAATCGATTTCTACAAAGAAGAAGCACGCGACATGATGATGGAAGTAGTAACCACCACCGATCTTCAACCGCCGCAGCTTCACCTCCAACAGCAACAACCTCCGCCGCAAATGATTCTTGGCGCAGAGAGCAGCGGCGAGGACCCGGAGATGGAGATCAAAGCTCCCAAGAAACGGGCAGAGACTTGGGTACAAGACGAGACGCGGAGTCTCATTGGTCTCCGACGCGAAATGGATTCGCTTTTCAACACATCAAAGTCGAATAAGCATCTTTGGGAGCAGATATCGGCCAAGATGAGGGAAAAGGGTTTCGATCGGTCGCCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAGGAGTTTAAGAAAGCTAAGCATCATGATAGAGGTGGAAGTGGTTCTGGGAAAATGTCTTGTTACAAAGAGATTGATGAGATCTTGAGAGATAGGAATAAGTGTACTCAGTATAAGAGTCCTACGCCTACTTCTAAAGTTGAAGCTTCTTACATGCAGTTTTCTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGGCCTGTTGAAGCTTCTGGGAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACACCCTCTTGCCATTGCTGCAGCTGATGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCCGGAAATGGTGGGGAAAGTCAGTCTTGTTGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGAAGGATAGGTATTGATGGCACTCCAGAAGCCATCAAGGAGGCAATTAGGGCCGCTTTTAGGTTGAGAACCAAACGTGCATTTTGGTTGGAGGATGAGGAACAGATTATCAGAAGTATTGACCGTGACATGCCTATAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCTATTAAAGTGTGCCTATATGATGACTCTGATCATATCCCCGTGCATACCGAAGAGAAGATATTTTATACAGAAGATGATTACCGTGATTTTCTGGCACGCCGTGCTTGGACATGCCTTCGAGAATTTGACGGTTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATACCGAGGTGTGAGTTGA 1152 0.4505 MYLSSEKPRPIDFYKEEARDMMMEVVTTTDLQPPQLHLQQQQPPPQMILGAESSGEDPEMEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGSGSGKMSCYKEIDEILRDRNKCTQYKSPTPTSKVEASYMQFSDKGIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAADVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDDSDHIPVHTEEKIFYTEDDYRDFLARRAWTCLREFDGYRNIDNMDDLRPGAIYRGVS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2179 383 CDD GT1 70 135 - -
Psa5g2179 383 Pfam Myb/SANT-like DNA-binding domain 71 156 IPR044822 -
Psa5g2179 383 Gene3D - 72 134 - -
Psa5g2179 383 ProSiteProfiles Myb-like domain profile. 64 128 IPR001005 -
Psa5g2179 383 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 6 382 - -
Psa5g2179 383 SMART sant 68 130 IPR001005 -
Psa5g2179 383 PANTHER - 6 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2179 Psa-Chr5 171738317 171744891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2179 21 382 Trihelix Transcription Factor Family AT3G25990 68.478 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g2179 Myb_DNA-bind_4 6.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2179 - - ccaj:109807736 656.366