Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2174 ATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTAATGAATTCCGGAAGTCAAAGGGTCTCATCTTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGGTGTACAGGTATATTTGGATCTCCTTACTTGTTTCACTTGTGACTATATTACCAGCATGCTCGTGTCCATATGA 258 0.4109 MVTRLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLGVQVYLDLLTCFTCDYITSMLVSI* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2174 85 Pfam Helicase conserved C-terminal domain 10 64 IPR001650 -
Psa5g2174 85 Gene3D - 2 78 IPR027417 -
Psa5g2174 85 PANTHER RNA HELICASE 1 65 - -
Psa5g2174 85 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 85 IPR001650 -
Psa5g2174 85 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 65 IPR027417 -
Psa5g2174 85 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2174 Psa-Chr5 169544890 169545860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2174 14 61 Eukaryotic Initiation Factors Gene Family AT3G19760 41.667 1.85e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2174 - - csat:104742512 122.479