Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2171 ATGTTTCACTTGTTGCTTCTTGTCCCAGTTTTCATACATTCTTCTCCAGTTCAAGATCCTGAATCAGTGGTCCAACAAGTCCAAAAGAGCATTATTGAGAATGAGAAGAGAAGAAAATTGGGTTATTATTCTTGTGGCACAAGCAACCCAATTGATGATTGTTGGAGATGTGACCCGAATTGGGAAAACAACCGCAAGCGTCTATCAGAATGCGCTATCGGATTTGGTCGACATGCAATCGGAGGCAAAGATGGTAAATACTACATGGTCATTGACTCATCTGATGACCCTATAAATCCCAAGCCAGGAACATTAAGACATGCTGTTATCCAACAAGAGCCATTATGGATCATTTTCAAACATGACATGGTGATTAATCTTAAAATGGATCTTCTCGTAAACTCCTACAAAACAATTGATGGTAGAGGAGCAAATGTGCACATTGCTGAAGGACCGTGTATTAGGATACAACAAAAGACTAACATCATAATTCATGGTATACATATTCATCATTGCGTACGAGGGCTTGGAGGAAGAATGCCAAGATGCAGATTCGGATACTTTCATGTGGTGAACAACGATTACACGCATTGGCAACAATATGCAATAGGTGGAAGTTCGTCCCCGACTATTTTTAGTCAAGGCAATAGATTTCTAGCTCCGGATGATGATGATCACAAAGAGATTACAAAGCATTTTGACTCGTCGGATGGTGAATGGAAGAACTGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGTGCTTACTTCACACCGTCGGGAGCAGGAGCATCGTCTTCGACTTATGCGAAAGCGTCGAGCATGGCAGCACGACCACCTATGCTTGTGGCTTCAATGACAGCAGGAGCAGGAGTTCTTAGTTGCAAAAAGGGTTACCAATGCTACTAG 912 0.4211 MFHLLLLVPVFIHSSPVQDPESVVQQVQKSIIENEKRRKLGYYSCGTSNPIDDCWRCDPNWENNRKRLSECAIGFGRHAIGGKDGKYYMVIDSSDDPINPKPGTLRHAVIQQEPLWIIFKHDMVINLKMDLLVNSYKTIDGRGANVHIAEGPCIRIQQKTNIIIHGIHIHHCVRGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFDSSDGEWKNWNWRSEGDLMLNGAYFTPSGAGASSSTYAKASSMAARPPMLVASMTAGAGVLSCKKGYQCY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2171 303 Gene3D - 48 172 IPR012334 -
Psa5g2171 303 Gene3D - 173 295 IPR012334 -
Psa5g2171 303 PANTHER PECTATE LYASE 2 175 - -
Psa5g2171 303 PANTHER PECTATE LYASE 174 299 - -
Psa5g2171 303 SUPERFAMILY Pectin lyase-like 70 302 IPR011050 -
Psa5g2171 303 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Psa5g2171 303 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Psa5g2171 303 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Psa5g2171 303 PANTHER PECTATE LYASE 18-RELATED 2 175 IPR045032 GO:0030570
Psa5g2171 303 PANTHER PECTATE LYASE 18-RELATED 174 299 IPR045032 GO:0030570
Psa5g2171 303 SMART amb_all 122 224 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2171 Psa-Chr5 169491892 169493479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2171 157 302 Polysaccharide Lyase AT5G63180 63.946 4.75e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2171 K01728 - gmx:100803068 289.656