Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2166 ATGGGAGAAACCGGTATCAATGTTCCTTACCCAGGAAACTTAAACCCTACGGCTCAAGAGTTTACTCCAACAAATCCCATTCCCCTCTCCGTCGCCGTCGGAGTTCCCTATCCCTACCCTCATTTCGCCGTCACACCTCCGCCGCATCTCTCCACCTTACCCACCCGCTCCGTTCTCCTCAGTCCAGTCCCTCCCACCACTGAATCCGACCTCCGGAAAGATCTCCAGGCGTTCGGTGAAGTCAGAGCTATCCAAACCGATTCCTTCCGTTACGGAATCGTGACCGCTCATTTCTACGACCTGAGACACGCAGAGGCGGCGTTCACCGCCATTCGTACTCACCACGTCCACTGCGTTTCGTTCTTTAACCCTATGTCTCAGCCCCAATTTCATCCCGCTCCACCACCTCCTCCGCCTGGACTTGTCGCCGGTGTGCCACTCTGGGCCCACTACGTCTTTTCCGATATTCAGAATCAAGGAACCCTTGTCGTTTTCAACTTAGACGACGACGTTTCCCCTGACCAGCTACGACAAGTTTTCGAGCCTTTTGGAGCCATAAAGGAAGTGAGGGAAATTCCAGGGAAGAAAAAGAGTCAAAGATTCGTGGAGTTTTTCGACATAAGAGATGCTGGCAAAGCTTTGAAAGAAATGAATGGAAAAGAAATCCAAGGAAAATCAATTGTTATTGAGTTTAGTAGTAGTTATGGAAGAAGATTCTTCCATTCAACTAATCCTAATTTTTCCTATATCTCCAATAAGCCATTTCATTTCAACTTTCCTCCTCCACCTCCACCACCTCCCTCGCCGCAACGTCGTTTTGGTCCACCGCAATTCTCTCACAAGAATTTCAGGACTGGTTCCATGAGTTCCAATAGTTTGAATGGGGATGAAAACAACCACTATTCCCCGAGGAGGAATTTCGTTAGGGAATTCATTGGGGAAAAACCATGGAACTGGAAGGGGAAGCAACCTTATAAGAATGAGACTCGTTATATAATCAAAGAAGATGCCATTGTTGAATCCGATTCTAGAACAACTCTCATGATCAAAAACATTCCCAACAAATACAGTCAGAAGCTACTCTTGAACATGTTGGACAACCACTGCATACGCTGCAACGATCAGATAGGCGACGGCGATGACAAGCCTCTATCTTCCTATGACTTCGTATACCTTCCTATTGATTTCAAGAACAAGTGCAACGTGGGATACGGGTTCGTGAATATGACATCTCCGGAGGCTACTCTAAGGTTCTACAAGGCCTTCCAGCAGCAACGTTGGGAGGTTTTTAACTCCAGAAAAATCTGCCACCTTACCTATGCCAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTATCTGCCGGTGGTATTTTCGCCGCCCCGAGATGGGAAGCGGTTAACGAAGCCATTTCCAGTAGTGGGGAGCATGGTTCCAATGGGTGCTGTAGATGATAAGATGGAGGGTCGAGATCATAGGGTGGTAGCAGGTGGTAGTAGTAGTGGTGGTGATGACTCAGTCAGCTGCAAAAGTGGCGGTGTAGCTGGTGGTAGTGATGATGATAAATCAGATGTGAAGTGA 1617 0.475 MGETGINVPYPGNLNPTAQEFTPTNPIPLSVAVGVPYPYPHFAVTPPPHLSTLPTRSVLLSPVPPTTESDLRKDLQAFGEVRAIQTDSFRYGIVTAHFYDLRHAEAAFTAIRTHHVHCVSFFNPMSQPQFHPAPPPPPPGLVAGVPLWAHYVFSDIQNQGTLVVFNLDDDVSPDQLRQVFEPFGAIKEVREIPGKKKSQRFVEFFDIRDAGKALKEMNGKEIQGKSIVIEFSSSYGRRFFHSTNPNFSYISNKPFHFNFPPPPPPPPSPQRRFGPPQFSHKNFRTGSMSSNSLNGDENNHYSPRRNFVREFIGEKPWNWKGKQPYKNETRYIIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCIRCNDQIGDGDDKPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRFYKAFQQQRWEVFNSRKICHLTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKRLTKPFPVVGSMVPMGAVDDKMEGRDHRVVAGGSSSGGDDSVSCKSGGVAGGSDDDKSDVK* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2166 538 Pfam RNA recognition motif 2 344 454 IPR007201 -
Psa5g2166 538 MobiDBLite consensus disorder prediction 497 538 - -
Psa5g2166 538 SUPERFAMILY RNA-binding domain, RBD 161 424 IPR035979 GO:0003676
Psa5g2166 538 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 227 IPR000504 GO:0003723
Psa5g2166 538 CDD RRM3_EAR1_like 344 445 IPR034458 -
Psa5g2166 538 Gene3D - 154 233 IPR012677 -
Psa5g2166 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 234 IPR000504 GO:0003723
Psa5g2166 538 PANTHER TERMINAL EAR1-LIKE 1 28 522 - -
Psa5g2166 538 SMART rrm1_1 161 230 IPR000504 GO:0003723
Psa5g2166 538 SMART rrm1_1 57 122 IPR000504 GO:0003723
Psa5g2166 538 PANTHER RNA BINDING PROTEIN 28 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2166 Psa-Chr5 168637472 168640632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2166 63 264 Eukaryotic Initiation Factors Gene Family AT1G34140 25.581 3.98e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2166 - - aprc:113851312 597.816