Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2149 ATGTTAGGAGAAGAAGGAAAAGAGATGAAACCACCTTCCATTAGGAGAACCTATTCACGTTCAGCTTCATGGACAGATCGTTCTCCAAATAGCCGGAAACCACCACGACCGTGTTTACCACCTCTTCAACCTCTTTCAATCAATAAGCGTAGCGTTGAGGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCACTTCCACAAACTCCGAGAGGGTCCATCACAAGTAATGAACCAACACAAGATTTTCAGTTTAAAAGAGATAAATTGGCTTTCTTTGACAAAGAGTGTTCCAGAATTGCGGAACATATTTACTTAGGAAGTGACACGGTGGCCAAAAACCATGAACTTCTTAGACAGAAAGGAATAACTCATGTGCTTAACTGTGTTGGATTTGTGTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACACTTTGGTTGCAGGACAGTCCTACAGAGGATATAACGTGTGTTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACGGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTCAAGACTGCAAGGGGAGTAACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAATTCTATTCTAAGGATGTATCGGATGGCTCCTCACTCTCCGTATGATCCTCTTCATCTTGTTCCTAAGATGGTTAACCAACCGTGTTCGCTAGCACTTGATTCTCGCGGTGCTTTCATCGTTCATGTTCCTTCTGCTATTTATGTATGGATTGGAAAAAATTGTAACTTGTTCATGTCATGCAACGCAAAGAGTGCGGCTTTTCAGGTCGTGCGCTACGAGAGAGCAAATGGTCCGATTCTGAGTATCCATGAAGGTCAAGAATCAACTGAATTTTGGGCTGCTCTTTCTGATGAACAACGTTTATCAGGTGATTCTGATAAGCAACTGGTTTTGCCTACTGAAAAAATGGAGATTGGTCTAAGAAAAGTTGATGCTTATGATTTGGATTATGAGATTTTTCACAAGGCAATTTCTGGCGGGGTTGTTCCGCCTTTTTCTGAAACTAGTGCTGGATCAGAAACTTGTCTTCCTGCTAGAGAACATGGCTGGGCAAGATTGAGGCGGAAGTTTGCTAGTGGTGTCATGAAAGAAATCTTGACATCACCCAAATGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATCCCTTGTCTGCGTCACCGTCATCAAATCATCCCAGTGAGTGTGGCTCCCCGGATTCCTTTGAATGTTATCTAACCAGCTTAGACAGAGGAAAAGATACTGTTGAAACCATGGACTTGTCTGAATCTGATCCTGCTGTTTCTTCTTTGCTGCCACTATCTCCCTGTGGCAGTTATTTTCCTTGTGGTTTTCTAAGCAGCAGCCCGAAATTCAATTCCAAGTCGCCAACACTTTCTCCTTCAAGTTCTGATTACGCAAGTTCGTTTACATTTTCGCCTTCCTCTACCAATTGGTCAGACTTGTCGTTCGTGTCTTCTCAGCAGCCATCACCATCTGGCCAGGAATCAATTGAACCTTTAGTCATTTTCGACTGA 1716 0.4254 MLGEEGKEMKPPSIRRTYSRSASWTDRSPNSRKPPRPCLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSITSNEPTQDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCVLYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYERANGPILSIHEGQESTEFWAALSDEQRLSGDSDKQLVLPTEKMEIGLRKVDAYDLDYEIFHKAISGGVVPPFSETSAGSETCLPAREHGWARLRRKFASGVMKEILTSPKWKCDVIMEEEKQDFVADDDPLSASPSSNHPSECGSPDSFECYLTSLDRGKDTVETMDLSESDPAVSSLLPLSPCGSYFPCGFLSSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSQQPSPSGQESIEPLVIFD* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2149 571 MobiDBLite consensus disorder prediction 549 571 - -
Psa5g2149 571 SMART dsp_5 98 237 IPR020422 GO:0006470|GO:0008138
Psa5g2149 571 Gene3D Severin 250 348 IPR029006 -
Psa5g2149 571 MobiDBLite consensus disorder prediction 16 30 - -
Psa5g2149 571 Gene3D Protein tyrosine phosphatase superfamily 76 240 IPR029021 -
Psa5g2149 571 CDD DSP 99 233 - -
Psa5g2149 571 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 164 218 IPR000387 GO:0016311|GO:0016791
Psa5g2149 571 Pfam Dual specificity phosphatase, catalytic domain 106 236 IPR000340 GO:0008138|GO:0016311
Psa5g2149 571 SUPERFAMILY Actin depolymerizing proteins 244 345 - -
Psa5g2149 571 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 240 IPR029021 -
Psa5g2149 571 ProSitePatterns Tyrosine specific protein phosphatases active site. 182 192 IPR016130 GO:0016311|GO:0016791
Psa5g2149 571 PANTHER MKPA PROTEIN 17 558 - -
Psa5g2149 571 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 17 558 - -
Psa5g2149 571 MobiDBLite consensus disorder prediction 1 44 - -
Psa5g2149 571 ProSiteProfiles Dual specificity protein phosphatase domain profile. 98 240 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2149 Psa-Chr5 167597071 167598860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2149 1 134 Protein tyrosine phosphatase (PTP) family AT3G55270 40.541 6.64e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2149 - - lja:Lj6g3v0574850.1 817.379