LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2136	ATGACTCACTTCTTTGGACTCATACTTCTTGTTTTTTTCATGATCCATATGTCACATGCTATCAATACAAACCAAACTCAGTTTTTTTCTGTCATGAAAGACTCTCTCAAAGGAAACTATCCTTTTGATTGGGGCGCAAGCAACGTCGAAAAACCAGTATGTGATTTCACCGGAATCACATGCGATAACAAAGGCGATATTATAAAACTCGATTTTTCAGGTTGGTCGTCGCTTTCGGGAAATTTCCCTACAGATTTTTGTTCTCACCTTCCAAATTTACGCGTCATAAACCTCGGGAAGACAAAAGTCAAGTTTCCGATAAACAACATAATCAACTGTTCTCGTATAGAAAAGTTGATCATGAACCAGATGCACCAGTCAGGAACACTTCCGGATTTCTCATCTTTGAAAGCTCTCAGAGTCCTCGACTTATCGTATAACTCCTTCACCGGGGACTTCCCTATGTCAGTTTTCAATCTCACAAACCTCGAAATTCTCAACTTCAACGAAAACAATGGATTCAATCTATGGGAGTTACCAAAAAGCTTTGAAAGATTGAAAAATCTCAAATCCATGGTTCTATCAACATGCATGCTGCATGGTCAAATTCCACCATCCATATCAAACATAACAACTCTCATTGATCTTGAATTGAGTGGAAATTTCCTCACAGGTCAAATTCCAAAAGAGCTTGGTTTGTTGAAAAACTTGCAACAGCTTGAACTTTACTATAACTACCACCTTGTTGGTAACATTCCAGAAGAGCTCGGAAACTTAACCGAACTCATCGATTTGGATATGTCGGTAAACAAGCTAACCGGAACAATCCCTTCTTCTGTTTGTAAACTTCCAAAGCTTCAAGTTCTTCAGCTTTACAATAACAGTCTCACAGGTCAAATTCCAGATGAAATAGAAACCTCAACAACTCTCCGAATGTTGTCGCTTTACGACAATTTCTTAAGCGGACATATTCCTAAGAAGCTAGGACAGTTCTCAGGAATGGCTCTTGTTGATTTGTCTGAAAACAAATTGTCTGGTCCTTTACCAGAACATGTCTGTGAAGGAGGTAAACTGTTATATTTTCTTGTTTTGGATAACTTTTTATCTGGTTTTATACCAGAAAGTTACGCGAAATGCGTTTTTCTGTTACGGTTTCGTGTCAGTAATAACCGTTTACAAGGTTCAGTTCCAAAAGGACTCTTGAGTTTACCTCATGTTTCAATCATTGATTTGAGTAGTAACAATTTAACCGGTTCGATTCCTGAGATTAACGGAAACTCAAGAAACCTGTCTGAACTTTTCCTTCAGAGGAACAAGATTTCAGGAGAAATCACACCAACAATCTCTAGAGCTTATAACCTTGTCAAAATTGATTTCAGTTATAACTTTCTTTTCGGTCCAATCCCTTCGGAAATCGGCAACCTTAGAAAGCTTAACTTGCTTATGCTACAAGGCAACAAGTTGAATTCTTCTATTCCTGGTTCACTTTCTTCTTTGGAATCACTTAACCTTCTTGATCTTTCGAATAATCTCTTAACCGGAAACATCCCCGAAAGCCTCTCCGTGTTGTTGCCTAACTCCATTAACTTCTCACACAATCTTCTTTCTGGTCCAATTCCTCCTAAACTGATTAAAGGAGGTTTAGTTGAAAGCTTTGCAGGAAATCCTGGTCTATGCGTGGTGATTCCGGTGTATGCGAATTCGTCTGATCAAAAAAATTTCCCACTATGTTCACATGGTTACAAGAGTAAGAAGATGAACACTATCTGGGTGGCTGGTGTGTCTGTGATTTTGATTTTTGTAGGTGCTGGTTTGTTCTTGAAAAAAAGATGCAGCAAAGACGCGGCTGCGGTCGATCACGAGGACACACTCTCTTCATCCTTTTTCTCTTATGATGTTAAAAGCTTTCACATGATTAGCTTTGATCAAAGAGAGATTGTTGAGTCTTTGGTTGATAAGAACATTATGGGACATGGAGGGTCAGGGACCGTATACAAAATCGAGCTGAAAAGTGGCGACGTTGTCGCGGTTAAACGGCTTTGGAGCCGAAGCTCGAAGGATTCGTCGCCCGAAGACGCGTTATTCGTGGACAAAGCATTGAAAGCTGAGGTGGAAACATTGGGAAGCATAAGGCACAAGAATATAGTTAAGCTATATTGTTGCTTCTCAAGTTTGGATTGTAGTTTGTTGGTTTATGAGTACATGCCAAATGGTACTTTGTATGATTCACTTCACAAGGGTTGGATTCATTTGGATTGGCCTACAAGGCATAGGATTGCACTTGGAATTGCTCAAGGTCTTGCATACCTTCATCATGATTTGGTTTTTCCTATTATCCATAGAGATATTAAGTCAACTAATATTCTCTTGGATGAAGATTATCATCCTAAGGTTGCTGATTTTGGGATTGCTAAGGTTTTGCAAGCAAGAGGTGGAAAGGATTCCACTACCACTGTCATTGCAGGAACATATGGTTACCTAGCCCCAGAATACGCCTATTCACCAAGGGCTACAACAAAGTGTGATGTGTACAGTTTTGGTGTGATTTTGATGGAGCTCTTAACTGGTAGAAAGCCAATTGAGTCAGAATTTGGAGAAAACAGAAACATTGTCTTTTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGAGCTAGACCAAGTGAAGTTTTTGATCCAAAGCTATCATGTTCATTCAAAGATGACATGGTTAAGGTTTTGAGAATTGCGATCCGATGCAGTTACAAAGCACCGGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAACCAAAAAGTTCTGATTCTTGCAAGTTGTCAACTAAGGAAGTATCAACAAATGTTAATTTAGTGAAGAAACCATTTGAGTTATAG	2886	0.3929	MTHFFGLILLVFFMIHMSHAINTNQTQFFSVMKDSLKGNYPFDWGASNVEKPVCDFTGITCDNKGDIIKLDFSGWSSLSGNFPTDFCSHLPNLRVINLGKTKVKFPINNIINCSRIEKLIMNQMHQSGTLPDFSSLKALRVLDLSYNSFTGDFPMSVFNLTNLEILNFNENNGFNLWELPKSFERLKNLKSMVLSTCMLHGQIPPSISNITTLIDLELSGNFLTGQIPKELGLLKNLQQLELYYNYHLVGNIPEELGNLTELIDLDMSVNKLTGTIPSSVCKLPKLQVLQLYNNSLTGQIPDEIETSTTLRMLSLYDNFLSGHIPKKLGQFSGMALVDLSENKLSGPLPEHVCEGGKLLYFLVLDNFLSGFIPESYAKCVFLLRFRVSNNRLQGSVPKGLLSLPHVSIIDLSSNNLTGSIPEINGNSRNLSELFLQRNKISGEITPTISRAYNLVKIDFSYNFLFGPIPSEIGNLRKLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGNIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVVIPVYANSSDQKNFPLCSHGYKSKKMNTIWVAGVSVILIFVGAGLFLKKRCSKDAAAVDHEDTLSSSFFSYDVKSFHMISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDVVAVKRLWSRSSKDSSPEDALFVDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLYDSLHKGWIHLDWPTRHRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAIRCSYKAPASRPTMKEVVQLLIEAEPKSSDSCKLSTKEVSTNVNLVKKPFEL*	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2136	961	PANTHER	RECEPTOR PROTEIN-TYROSINE KINASE CEPR1	8	942	-	-
	Psa5g2136	961	Gene3D	Transferase(Phosphotransferase) domain 1	735	956	-	-
	Psa5g2136	961	SMART	serkin_6	650	937	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g2136	961	ProSiteProfiles	Protein kinase domain profile.	650	937	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g2136	961	Pfam	Protein kinase domain	652	928	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g2136	961	Gene3D	Phosphorylase Kinase; domain 1	633	734	-	-
	Psa5g2136	961	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	778	790	IPR008271	GO:0004672\|GO:0006468
	Psa5g2136	961	SUPERFAMILY	Protein kinase-like (PK-like)	634	930	IPR011009	-
	Psa5g2136	961	Gene3D	Ribonuclease Inhibitor	26	174	IPR032675	-
	Psa5g2136	961	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	8	942	-	-
	Psa5g2136	961	SMART	LRR_typ_2	283	307	IPR003591	-
	Psa5g2136	961	SMART	LRR_typ_2	499	523	IPR003591	-
	Psa5g2136	961	SMART	LRR_typ_2	403	426	IPR003591	-
	Psa5g2136	961	SMART	LRR_typ_2	475	498	IPR003591	-
	Psa5g2136	961	SMART	LRR_typ_2	136	160	IPR003591	-
	Psa5g2136	961	SUPERFAMILY	L domain-like	66	349	-	-
	Psa5g2136	961	SUPERFAMILY	L domain-like	249	562	-	-
	Psa5g2136	961	Gene3D	Ribonuclease Inhibitor	175	279	IPR032675	-
	Psa5g2136	961	Gene3D	Ribonuclease Inhibitor	282	573	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2136	Psa-Chr5	167008051	167011280	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2136	25	936	Receptor kinase-like Gene Family	AT5G49660	64.083	0.0	1177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Psa5g2136		Pkinase	1.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2136	-		-	gmx:100785822	1539.24