Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2116 ATGGATAGAAATAGACCCTACGCTTCATGTGATTTTTTCATTTTTCATAATTTAGATTACATATGTTCCAGTTCAAATTTGTTTCACTATGTTTCTTATCACAGTTTCACTGGAAATAAGTTGAATTGTGGCGTGAGTTATCAGCATCTTTGCACATCTGATAATGCAAATCAAGGTTCATCACACAAATCAAAAGTAGGCCTCATAGTTGGAACAGTTATCGGTTTGATTCTTCTTCTTTTACTTGGTAGCCTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATTACATTAGGTCAAATAAAAAAGTTTTCCTGGAGAGAACTACAAATAGCTACAGACAACTTCAGCGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGTTTTAGCTGATGGGACAAAAATTGCAGTTAAAAGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAAGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTTCTACTCCAACAGAACGTCTCTTAGTTTATCCTTTCATGCAGAACTTAAGTGTCGCTTCTCGACTACGAGAGCTCAAACCCGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACAGCCCGAGGCCTTGAATATCTTCATGAACAATGCGATCCTAAAATTATTCATAGGGATGTAAAGGCGGCAAATATATTACTAGATGGAGATTTCGAAGCCGTTGTCGGCGACTTTGGTTTGGCAAAACTGGTTGATGTTCGAAGGACTAATGTTACAACTCAGATTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCTACGGGAAAGTCTTCAGAAAAAACAGATGTTTTTAGTTACGGGGTTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCGCGTTTGGAAGATGAAGATGACGTGTTATTGCTTGACCATGTGAAGAAGCTACAACGGGAGAAAAAACTAGACGCAATTGTTGACAGCAACCTTAAAAAAGAGTACAACATAGAAGAGGTTGAAATGATAGTACAAGTTGCATTACTGTGCGCACAAGGTATGCCGGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGGTGGGAAGAATGGCAGCATGTGGAGGTTAGTCGGAGGCAAGACTCGGAGAGAATGCAAAGAAGATTTGCATGGGGAGAGGATTCGATTCATAACCAAGAAGCCATTGAGTTGTCGGGTGGAAGATGA 1359 0.4143 MDRNRPYASCDFFIFHNLDYICSSSNLFHYVSYHSFTGNKLNCGVSYQHLCTSDNANQGSSHKSKVGLIVGTVIGLILLLLLGSLLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMQNLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKKEYNIEEVEMIVQVALLCAQGMPEDRPAMSEVVRMLEGEGLTERWEEWQHVEVSRRQDSERMQRRFAWGEDSIHNQEAIELSGGR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2116 452 Gene3D Transferase(Phosphotransferase) domain 1 206 423 - -
Psa5g2116 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Psa5g2116 452 ProSiteProfiles Protein kinase domain profile. 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2116 452 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Psa5g2116 452 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 27 452 - -
Psa5g2116 452 SMART serkin_6 129 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2116 452 SUPERFAMILY Protein kinase-like (PK-like) 107 404 IPR011009 -
Psa5g2116 452 Gene3D Phosphorylase Kinase; domain 1 98 205 - -
Psa5g2116 452 PANTHER LRR RECEPTOR-LIKE KINASE 27 452 - -
Psa5g2116 452 Pfam Protein kinase domain 130 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2116 Psa-Chr5 164790790 164793583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2116 26 452 Receptor kinase-like Gene Family AT5G10290 76.102 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa5g2116 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2116 - - gmx:100786654 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1211 7 89155061 89157799 Psa5g2116 5 164790790 164793583 ECH
Psa6g0748 6 26502479 26506620 Psa5g2116 5 164790790 164793583 ECH
Psa5g2116 5 164790790 164793583 Psa5g2116 5 164790790 164793583 ECH