Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2114 ATGTCTAATCCGAACCTAGATTCACATCACCCGCAGCAAGATCCTAATAGCAACGCCGACCCTCAGGTTCCGCTTCGGAACCTATCCCTGGTTCGGACCAGAATCGATTCTCTACGAACATTTCTCTCCCAATCCATCAACACCAACACTCCCTTCACCAACGATCAAATAACCGTCGTCTCCAACCAGATCGCCTCCGCCATCAACCACACCATAGTCAACGCCGCCGCACTTGTCTCTTACTCTCAAAATCTCACTGTCCCCGCAGTCTCCGTCCTCCCACCGACCAATCTCAGCCTCCGACCAGAACCACATATGCACGATTCGAAAATCGAACCACCTGACAACAACTATGTCACAGTGGATGACTCTGATTCCGACTGCGAAATCGTGGAGCTCGACGCTGTGGAATTGCTCGCGCAACACCTCCATTTCTGCGAGATTTGCGGGAAAGGTTTCAAGCGCGACGCGAATCTCCGGATGCACATGCGAGCGCACGGGAACAAGTTCAAGACGCCGGAAGCGTTGGCGAAGCCTTTAGACGGCAGCGCACGCCGCGGTTCGACGCGGTTCTCGTGTCCGTTCGAAGGATGTAACAGAAACAAGAAACATACGAAGTTCAAGGCGTTGAAATCGGTGATATGTGTTAAGAATCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTGATCGGTGTCATAAGAAGAAGTATTCGGTGCTTTCGGATTTGAAGAGCCATATGAGACAGTGTGGGGAGTGTAAGTGGAAGTGCTCATGTGGGACCACCTTTTCTAGGAAGGATAAATTGTTTGGACATATTGGTCTGTTTGAGGGTCACATGCCTGCTGTTGTTTTGGAAGATGAGGAGAAAGGGAAACAAGTTATGGTGCAGGAGAGTGAAGGGGATTTGGATTTGGATATGGATGAAGAGTTCTTTGATGGTTTTGGATCTATTGATAACTATTGTTTGAGGGAAGTTTTGGGATTTTCTGATAGCTAG 1005 0.4876 MSNPNLDSHHPQQDPNSNADPQVPLRNLSLVRTRIDSLRTFLSQSINTNTPFTNDQITVVSNQIASAINHTIVNAAALVSYSQNLTVPAVSVLPPTNLSLRPEPHMHDSKIEPPDNNYVTVDDSDSDCEIVELDAVELLAQHLHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPLDGSARRGSTRFSCPFEGCNRNKKHTKFKALKSVICVKNHFKRSHCPKMYSCDRCHKKKYSVLSDLKSHMRQCGECKWKCSCGTTFSRKDKLFGHIGLFEGHMPAVVLEDEEKGKQVMVQESEGDLDLDMDEEFFDGFGSIDNYCLREVLGFSDS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2114 334 SUPERFAMILY beta-beta-alpha zinc fingers 142 167 IPR036236 -
Psa5g2114 334 Gene3D Classic Zinc Finger 144 167 - -
Psa5g2114 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Psa5g2114 334 SMART c2h2final6 144 166 IPR013087 -
Psa5g2114 334 SMART c2h2final6 229 250 IPR013087 -
Psa5g2114 334 SMART c2h2final6 191 224 IPR013087 -
Psa5g2114 334 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Psa5g2114 334 Pfam Zinc-finger of C2H2 type 145 164 - -
Psa5g2114 334 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 12 329 - -
Psa5g2114 334 MobiDBLite consensus disorder prediction 1 23 - -
Psa5g2114 334 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 329 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2114 Psa-Chr5 164712510 164714358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2114 129 303 C2H2 Transcription Factor Family AT1G34370 59.669 1.49e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g2114 zf-met 0.0027 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2114 - - cam:101491258 486.108