Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2107 ATGTGCGGAATCTTAGCAGTATTGGGCGTAGTCGACAACTCTATCTCCAAACGCGCCCGCATCATCGAACTCTCTCGCAGATTGAAACACAGAGGCCCTGATTGGAGTGGTTTGCATTCTCATCAAGATTGTTACCTTGCTCATCAACGCCTCGCCATTGTTGACCCTACTTCTGGAGATCAACCTCTTTACAACGAAGACAAAACCGTTATCGTCACAGTAAATGGGGAGATCTACAACCACAAGAAGTTGAAACAGAATCTGACTTCTCATCAATTTAGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAACATGGTGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTACTTGACACTAAAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGAATTACCCCTCTTTACTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCATCTGAAATGAAGGCTCTGGTTGATGACTGTGAGAGATTAATATGTTTTCCTCCGGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCAACATGGTTCTCGGAGCAAATTCCATCAACACCCTATGATCCAACGATTTTGCGTGAGACTTTTGAGAGGGCTGTAGTTAAAAGACTCATGACTGATGTCCCTTTTGGAGTTCTTTTGTCTGGAGGATTGGACTCATCACTTGTTGCTGCGGTGGCCAATCGATATTTGGCTCAATCTGATGCTGCTCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTTTAAAGGGTTCTCCGGATTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGCACTCGTCACCACGAACTTCATTTCACGGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATACTGAAACATATGATGTGACAACTGTGAGAGCAAGTACTCCAATGTTTCTCATGTCTAGGAAAATCAAATCATTGGGAGTGAAAATGGTTCTTTCCGGAGAAGGTTCAGATGAAATATTTGGGGGTTACCTGTATTTCCATAAGGCACCTAACAAGGAAGAGCTTCATGAAGAAACATGTCGAAAAATTAAAGCACTTCATCTTTATGATTGCCTTAGAGCCAATAAATCAACTTCCGCTTGGGGTATAGAGGCACGTGTACCATTCTTGGATAAAGACTTCATCAGCACTGCCATGGCCATCGATCCTGAGTGGAAATTGATAAGGCCTGATCTTAAAAGGATAGAGAAATGGGTAGTGCGCAATGCATTTGATGACGATGAGAATCCATATTTGCCAAAGCACATACTGTACAGACAGAAGGAACAGTTCAGTGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGACCATGCTAGTGCTCAAGTCACAGATGCAATGTTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACTACTATAGGACAATTTTTGAGAAGTTATTTCCAAAGAGTGCTGCGAGGTTAACAGTTCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGATCCTTCTGGTCGTGCAGCGCTTGGGGTTCATTCAGATGCATACAAGGATGCAGCAGATACCAAAATAGCCGAGCCCGAAAATGGATCCCTCTGA 1713 0.432 MCGILAVLGVVDNSISKRARIIELSRRLKHRGPDWSGLHSHQDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKKLKQNLTSHQFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTKDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALVDDCERLICFPPGHIYSSKQGGLRRWYNPTWFSEQIPSTPYDPTILRETFERAVVKRLMTDVPFGVLLSGGLDSSLVAAVANRYLAQSDAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELHFTVQEGIDALEEVIYHTETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHEETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKDFISTAMAIDPEWKLIRPDLKRIEKWVVRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHASAQVTDAMLKHANFVYPENTPTTKEGYYYRTIFEKLFPKSAARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHSDAYKDAADTKIAEPENGSL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2107 570 PANTHER ASPARAGINE SYNTHETASE 1 565 - -
Psa5g2107 570 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Psa5g2107 570 PIRSF Asn_synthetase_glu-h 357 516 IPR006426 GO:0004066|GO:0006529
Psa5g2107 570 Gene3D HUPs 194 513 IPR014729 -
Psa5g2107 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Psa5g2107 570 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 366 IPR006426 GO:0004066|GO:0006529
Psa5g2107 570 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 565 - -
Psa5g2107 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 200 485 - -
Psa5g2107 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 192 IPR029055 -
Psa5g2107 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Psa5g2107 570 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Psa5g2107 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Psa5g2107 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Psa5g2107 570 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2107 Psa-Chr5 164312314 164316179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2107 61 179 PRT Gene Family AT4G38880 35.075 1.48e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2107 K01953 - gmx:732660 1059.28