Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2067 ATGGCGACAGCAATGACTTGGAGATTTACTGCAAATAATGGTACCGGCCTTGCTGCTAATGAGGAAAGAAATGGCGATGGCAAGGCTCAAGATTCAGAGGCTCCAACTCCCCATTCTGTTCCGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGCATGGAGGATGCAGATGGGACATTAGCAAGTATTGCTCAATGCATTGAGCAGCTACGTCGGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAGAAATTACTGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCAGTTGGATCTCATTCTCAGGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGTTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAATTAAGGGTGAAAGTTTTGCTTGGAGGATGCATTCCTCCTTTGCTCAGTCTACTAAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCCCAAGGTGATGCCAAAGATCACGTTGGATCAAAAATCTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGGGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGTGGAACTGAGAGATTCTGGAATGCGACAATACAGTCTGGAGGAGTGGACATATTACTGAAGTTACTGGCAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCTTGTATGATGATGGAAGATGCATCTTTTTGCTCAAAGCTATTGACAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGACGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTATTAAATCTCTATCTGCCCAGTGCCAAGATGCAAGGAAAGAGATAGCTAATTGTAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCAATACAGGAGAATGCTATGAGTGCTCTTGCAAACATCTCTGGTGGATTGTCTTATGTCATCTCCAGCCTTAGTAAAAGCCTTGAATCATGCTCCTCACCTACCCAAACTGCCGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATACGATGACAAGGCAGAATATACTAAAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTCGAGCAATTTAAACCCCGGTCTCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTATCACTTAAACTTGCAAATTCTGATGCAAAGCGTTTACTTGTTGGTTTGATAACAATGGCGGCTAAAGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCAATTGATATCACTTCTAGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTATTGTCTGATGAAAATGTTGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCGGGATCTGCCAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCCTGTGTTGAAAGCGCTGATGCAGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCTAAGACCTTGAATCACTTGATTCATAAATCTGATACGGCAACTATCAGTCAGCTCACGGCATTATTGACTAGTGATCTACCTGAGTCCAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGATGGCAGTGCTGCGAGTGATGCGATCAATACAATGATAAAATTATTAAGCTCCACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCAGGAATTTTTGAAACGAGGAAAGATGTGCGCGAAAGCAACATTGCTGTGAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATGTTGAATCTAGAAGTATCTTAGTGGAGTCCTCACGCTGCCTAGCTGCAATATTTCTTTCCATTAAAGAGAATAGGGAGGTAGCTGCTAATGCTAGAGATGCATTATTCTCTCTAGTTGCACTAGCTAGCTCTTCAGTTTTGGAAATAGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTTTATTGGATAGTGAAATTGCAGAGAAAGCTATTGTTGAGGAAGTTATTTTTCCTGCTACCAGAGTATTGCGTGATGGCACAAGATCTGGAAAAATACATGCAGCAAGAGCAATTTCTCGCCTTTTGCATTCTAGGGAAGTTGATTATGCTGTAAATGATTGTGTGAACCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAATGAACCTGTTGCGACAACAGAGGCTCTAGAAGCACTTGCCATTCTGTTCAGGTTGAAAGAGACAGCTGGACTTAGTAAACCTGCTTGGATGACTTTGGCAGAATTCCCTAAAAGCATCAGCCCAATTGTTCTGTCAATTGCCGATTCAACACCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCCCGATTATGTAAGGATCAGCCTTCCGTGTTAGGAGAGATTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGAATAATCAATTCCAGTTCCACAAATCTGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAGAGGCTGGTGGAGGATCTAAATTTATCAAACTTGTGTGCTGATCTTGTACAGTCGCTCGTTGATATACTTATTTCTTCGCAGGCTACTTTGGTTAATCAGGACAATGACAAGAAAGAAGCCATCAGCATATGCAGGCATATAAAAGATGACAGTGATGGTAAATACACCAACAGCACCACCATTATATCTGGTGCCAATGTAGCTATATGGTTACTGTCTATTCTTGCTAGCCATGATGAAAAAGCTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGATTCTCACTGAGAGGATTGAAAATTTCCCCTCACAGTATACTCAGATTGACTATAAAGAAGATAGCAGCACGTGGAGTTGTGCTTTGTTGTTGGCAATATTATTTCAAGACAGGGATATCATACGAGCACATGCAACAATGAAATCTATACCAGCCCTTGTCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTTTATCTGTGGCGAATTCTGGGGCGCCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATGCTGATATACAGGATCTTCTGGAATTGTCAACTGAATTTTCATTGGTGCCTTATCCTGATCAAGTTGCTCTCGAGAGGTTGTTTAGAGTTGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTACTCAAACCGATTCCAGATCGCCCAGGCGCACCATTTTTGGCACTTGGGATTATGACACAGCTTGCTACAGATTGTCCATCAAATAAGATTGCAATGGCAGAGTCGGGGGCCATAGAGGCACTCACTAAGTATCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCCACAGATCTGTTGGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACACGAGTCTGCATTTGGTGCTGTTAATCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCATTGGAATGTTTATTCTCAGCTGACAACATTAGAAATGCAGATAATGCCCGGCATGCTATTAAACCCTTGGTGGAGATGCTTAATACTGGCTCAGAAAGAGAGCAACATGCTGCAATTTCTGCGTTAGTCAAGTTACTGAGTGAAAATCCTTCAAGAGTACTTGTTGTTGCTGATATTGAGAAGAATGCCATTGATGTTCTTTGCAGAATTCTTTCATTAGATTGTCCGATGGATTTCAAAGGGGATGCTGCTGAACTATGTTGTGTTCTCTTTGGAAATACAAAGATTCGATCCACAGTAGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCATGATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGGTAACGAGACATTGGCTGAACTAGTTGTTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGTAGGAACTTTGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGGAAAGATCGACCTAATTGTAAAATTGAAATGGTGAAAGCTGGAGTCATTGAAAGTGTACTTGACATCCTTCCTGAAGCACCTGATTATCTCTGCGCAGCTTTTACTGAATTGTTACGTATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGGCAAGAATTTGGGTCTGATGGTCAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACACCCACAGTGCCGTGCTGATTACACATTAACTTCTCACCATGCTATAGAACCACTCATCCCCTTGCTCGATTCTCAAAAAGTAGAAGTGCAGCAGTTGGTTGCTGAGCTTCTCTCACATCTACTTTTGGAAGAACACCTTCAGAAGGACCCAGTGACACAGCAAGTAATTGGCCCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTAAAGGCCCTTGTCAGTATTGCAATTGTATGGCCAAATGAAATTGCAAAAGAGGGTGGAGTTATTTGA 4989 0.4259 MATAMTWRFTANNGTGLAANEERNGDGKAQDSEAPTPHSVPKMGLRERSSSGMEDADGTLASIAQCIEQLRRSSSSMQEKEYSLKKLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKGGSVVDSLLTGALKNLYSGTERFWNATIQSGGVDILLKLLATGQSSTLANVCFLLACMMMEDASFCSKLLTADATKQLLKLLGPGNDAPVRAEAAGAIKSLSAQCQDARKEIANCNGIPALINATIAPSKEFMQGEYAQAIQENAMSALANISGGLSYVISSLSKSLESCSSPTQTADTLGALASALMIYDDKAEYTKASDPLAVEQTLLEQFKPRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAAKEVQDELLKALLTLCNSECSLWRALQGREGVQQLISLLGLSSEQQQECAVALLCLLSDENVESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLRDGSAASDAINTMIKLLSSTKEETQAKSASALSGIFETRKDVRESNIAVKTLWSAMKLLNVESRSILVESSRCLAAIFLSIKENREVAANARDALFSLVALASSSVLEIAELATCAVANLLLDSEIAEKAIVEEVIFPATRVLRDGTRSGKIHAARAISRLLHSREVDYAVNDCVNRAGTVLALVSFLDSAINEPVATTEALEALAILFRLKETAGLSKPAWMTLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPSVLGEIVATASGCISSIAKRIINSSSTNLKVKIGGAAILICAAKENHQRLVEDLNLSNLCADLVQSLVDILISSQATLVNQDNDKKEAISICRHIKDDSDGKYTNSTTIISGANVAIWLLSILASHDEKARIAIMEAGAIEILTERIENFPSQYTQIDYKEDSSTWSCALLLAILFQDRDIIRAHATMKSIPALVNLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAPGGLISLLGCADADIQDLLELSTEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGIMTQLATDCPSNKIAMAESGAIEALTKYLSLGPQDAIEEAATDLLGILFSSAEIRKHESAFGAVNQLVAVLRLGGRAARYSAAKALECLFSADNIRNADNARHAIKPLVEMLNTGSEREQHAAISALVKLLSENPSRVLVVADIEKNAIDVLCRILSLDCPMDFKGDAAELCCVLFGNTKIRSTVAAARCVEPLVSLLVSEFSPAHDSVVRALDRLVGNETLAELVVAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPNCKIEMVKAGVIESVLDILPEAPDYLCAAFTELLRILTNNASIAKGPSAAKVVEPLFFLLTRQEFGSDGQHSALQVLVNILEHPQCRADYTLTSHHAIEPLIPLLDSQKVEVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAIVWPNEIAKEGGVI* 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2067 1662 SUPERFAMILY ARM repeat 1506 1652 IPR016024 -
Psa5g2067 1662 MobiDBLite consensus disorder prediction 12 55 - -
Psa5g2067 1662 Gene3D - 404 646 IPR011989 -
Psa5g2067 1662 Gene3D - 51 403 IPR011989 -
Psa5g2067 1662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Psa5g2067 1662 SUPERFAMILY ARM repeat 825 1161 IPR016024 -
Psa5g2067 1662 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 18 1662 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Psa5g2067 1662 Gene3D - 1178 1300 IPR011989 -
Psa5g2067 1662 Gene3D - 871 1168 IPR011989 -
Psa5g2067 1662 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 18 1662 - -
Psa5g2067 1662 Gene3D - 1313 1662 IPR011989 -
Psa5g2067 1662 SUPERFAMILY ARM repeat 536 859 IPR016024 -
Psa5g2067 1662 SMART arm_5 1230 1271 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 481 523 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1399 1439 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 136 176 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 94 135 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 733 771 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1440 1480 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1038 1088 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 268 309 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 567 607 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1312 1353 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 311 360 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1566 1608 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1482 1522 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 525 565 IPR000225 GO:0005515
Psa5g2067 1662 SMART arm_5 1610 1649 IPR000225 GO:0005515
Psa5g2067 1662 Gene3D - 647 870 IPR011989 -
Psa5g2067 1662 Coils Coil 297 317 - -
Psa5g2067 1662 SUPERFAMILY ARM repeat 67 393 IPR016024 -
Psa5g2067 1662 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Psa5g2067 1662 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Psa5g2067 1662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Psa5g2067 1662 SUPERFAMILY ARM repeat 1187 1513 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2067 Psa-Chr5 159149464 159159404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2067 358 605 U-box Gene Family AT3G46510 26.687 2.40e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2067 - - gmx:100816765 2674.43