Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2056 ATGTGGGGAGAAGGATTCAAAAGTAACGGGAATTTAAGCGCGTCCATGCCGTTGATCGATGAGGCGGATTTGAAATTTGATAGTAGTCAGTCAGAGGATGTTTCTCATAGTATACTTGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGGCCGATTGATAAGATACAAAGGCGTCTTGCACAGAATCGAGAGGCTGCTCGCAAGAGTCGTTTGCGGAAAAAGGCTTATGTGCAACAGTTAGAATCAAGCCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTCGAACGTGTAAGACAGCAGGGAATGTATATGGGTGGCGGGTTGGATTCGAATAGTATGTGTTTTGTTGGGCCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATCTCAGAAATGAGAATTGCTTTAAACGCGCATATTAGTGACATAGAGCTCAGGATACTGGTAGATGGTATGATGAACCACTATACTGAAATCTATCGCATGAAATCCGCGGCCGCAAAAGCTGATGTTTTTTATGTGATGTCCGGAATGTGGAAAACAACAGCAGAAAGGTTTTTCTTGTGGATCGGTGGCTTTCGCCCTTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCATTGACAGAGCAACAACGGTTGGATATCGACAACCTTGGACAATCGTGTCAACAAGCGGAAGACGCCCTTTCGCAAGGCATGGAGAAACTCCGGCAAACACTCGCGGATAGCGTAGCAGCTGGACAATTCATGGAAGGAACTTATATTCCACAAATGGCTTCTGCTATGGAGAGGTTAGACGCTCTCGTAAGCTTTGTGAATCAGGCCGACCATCTTCGGCAGGAAACCCTACAGCAAATGTCGCGAATACTTACAACCCGTCAGTCAGCTCGGTGCTTGCTGGCTTTGGGAGAATATTTCCAACGCCTGAGAGCTTTGAGCTCACTATGGTCTAATCGACCACGCGAACCAGCTTAG 1020 0.4598 MWGEGFKSNGNLSASMPLIDEADLKFDSSQSEDVSHSILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNSMCFVGPMNSGIAAFEMEYGHWVDEQNRQISEMRIALNAHISDIELRILVDGMMNHYTEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFMEGTYIPQMASAMERLDALVSFVNQADHLRQETLQQMSRILTTRQSARCLLALGEYFQRLRALSSLWSNRPREPA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2056 339 Pfam Seed dormancy control 141 215 IPR025422 GO:0006351|GO:0043565
Psa5g2056 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 58 73 IPR004827 GO:0003700|GO:0006355
Psa5g2056 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 53 97 IPR004827 GO:0003700|GO:0006355
Psa5g2056 339 Coils Coil 74 101 - -
Psa5g2056 339 MobiDBLite consensus disorder prediction 35 54 - -
Psa5g2056 339 SUPERFAMILY Leucine zipper domain 55 96 IPR046347 GO:0003700|GO:0006355
Psa5g2056 339 SMART brlzneu 51 111 IPR004827 GO:0003700|GO:0006355
Psa5g2056 339 Pfam bZIP transcription factor 55 93 IPR004827 GO:0003700|GO:0006355
Psa5g2056 339 PANTHER TRANSCRIPTION FACTOR TGA9 1 338 - -
Psa5g2056 339 Gene3D - 54 104 - -
Psa5g2056 339 PANTHER TRANSCRIPTION FACTOR TGA1 1 338 - -
Psa5g2056 339 ProSiteProfiles DOG1 domain profile. 124 334 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2056 Psa-Chr5 158776995 158778685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2056 1 339 Calmodulin-binding Proteins AT5G65210 70.930 2.72e-178 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g2056 DOG1 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2056 K14431 - gmx:100793353 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2056 5 158776995 158778685 Psa5g2056 5 158776995 158778685 ECH