Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2052 ATGGCTGATCACTCAGACTCCTCTCCTCTTGTCCCTCCTATTCCCCTCTCCGACCCTTCCTCGATCGACCTCGAAGCCGGTCCCTCCGAGCAAATTCAGTGCCGGATTTGTCTCGAAACTGATGGTAGGGATTTCATAGCTCCTTGTATGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGCTCTGTCAAGGAAGGGTTTGCCTTTGCTCACTGCACTACGTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATCTTGTCTATTTTTCTGGCTGCACAGCTTATTATTACCTCACTGGCATATTTGGTTTATCTAATTGATGGTTACCAGCAAAGTTGGCTTCGTATTCTCTGGGGTTTTGAAAGTCAACTGAGCTTCTACTACTTATGTGGAGCTCTATTGTTTTTTGCCTTGCTTGGCGTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCGTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTATTATTTATAATGGCTTTGGTTGTTCTGGGACTTTTTACGGTAATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTAGGCCAACGGATATGGCAACGCCACTATCACATACTTGCAAAGAGGATGTTAACAAAGGAGTACGTGGTTGAAGATGTTGATGGAGAGATGACAGGGTCTGATTGGTCTCCCCCATCCCTTCCACCTGAGCATGTTCAGCAATTGAAAACATTGGGGCTCTTATGA 972 0.4486 MADHSDSSPLVPPIPLSDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCMCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAAQLIITSLAYLVYLIDGYQQSWLRILWGFESQLSFYYLCGALLFFALLGVSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPSLPPEHVQQLKTLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2052 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 96 IPR013083 -
Psa5g2052 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Psa5g2052 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Psa5g2052 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Psa5g2052 323 SUPERFAMILY RING/U-box 29 86 - -
Psa5g2052 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Psa5g2052 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Psa5g2052 323 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2052 Psa-Chr5 158413615 158419549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2052 1 323 C3H Transcription Factor Family AT2G22120 84.568 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2052 - - gmx:100791777 603.594