Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g2038 | ATGATGAATTTTTCTTGGGAACCATTTTGCGCCCCTTTTGATGGAAACGAGGTAAGGTTCTTTCGATCTTTCGAACAAGGGCATGTGGGGGATTTTGTTCGCATTAAGGTTCGTGTTAAACATGAACTATGCATCACTCCCCAACAACACCCTTCTTTAATTTTACCTTTTGATCGATTTTTACATGAGCGAATCATGTTTGTTCCTTACCAAGATTTTCTACAACATGCTTTGATATACATGCAAGTTTACTTTCCTAATGTTATCATCCCCGATGAGTTAATGTACACAATGCTGCCGTTTTTAATGACATATGTTTGTGATGCACGAAACTCTCCTTCTGGCTTTCAATATGAAGGTTCTCGGATTCGTGTTTTTCCTCTGGGTTTGGATGTTTTTGTTCAAATGTTATTTGGTGAATGTGACAATGTTGTCATCAATAACATAGCCGCAGTGTTAGATTCCATTGGAGAGGCACGATTTGTTCCGGCATCAAAGGAAGCCATTGAATCTCTTGAGAAGGTGAAGATCGAAAATTGTGATGCCATTGAAAAGTGTAGTGTTTGTCAATTTGAGTTCAATGCTGGAATGGAAGTTACAAAAATGCCTTGCAATCATCTGTATCATCAAGAATGCATTGTTCAATCGCTGGAAATAAGTCATATGTGCCCAATGTGTCGCTATCCAATGCCAACTTCAACCAGTGGCTGA | 711 | 0.3896 | MMNFSWEPFCAPFDGNEVRFFRSFEQGHVGDFVRIKVRVKHELCITPQQHPSLILPFDRFLHERIMFVPYQDFLQHALIYMQVYFPNVIIPDELMYTMLPFLMTYVCDARNSPSGFQYEGSRIRVFPLGLDVFVQMLFGECDNVVINNIAAVLDSIGEARFVPASKEAIESLEKVKIENCDAIEKCSVCQFEFNAGMEVTKMPCNHLYHQECIVQSLEISHMCPMCRYPMPTSTSG* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g2038 | 236 | Pfam | Ring finger domain | 185 | 227 | IPR001841 | - | |
| Psa5g2038 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 233 | IPR013083 | - | |
| Psa5g2038 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - | |
| Psa5g2038 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 154 | 232 | - | - | |
| Psa5g2038 | 236 | PANTHER | F6A14.12 PROTEIN-RELATED | 154 | 232 | - | - | |
| Psa5g2038 | 236 | SUPERFAMILY | RING/U-box | 168 | 233 | - | - | |
| Psa5g2038 | 236 | SMART | ring_2 | 186 | 226 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g2038 | Psa-Chr5 | 157465369 | 157466289 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa5g2038 | 149 | 231 | C3H Transcription Factor Family | AT1G18760 | 33.333 | 4.15e-14 | 67.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa5g2038 | - | - | aprc:113870408 | 160.614 |