Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2037 ATGATGAATTCCATGTCCTACAATTTTTCTTGGGACACATTTTCCGCCCCTTTTGATGAAAACGAGGTAAGATTCTATCAATCTTTTGAACAAGGGCATGTGGGGGATTTTGTTCGCATTAAGGTTCGTGTTAAACACGAACTATGCATCACTCCCCAACAACACCCTTCTTTAATTTTACCTTTTGATCGGTTTTTATATGAGCAAATCATGTTTGTTCCTTACCAAGATTTTCTCCAACATGCTTCCATATACATGCAAGTTTACTTTCCTAATGTTATCATCCCCCATGAGTTGATGTACACAATGCTGCCATTTTTAATGACATATGTCTGGGATGCACGAAGTTCACCTTCCGGCCTTCATTACGAAAGTCCTCGAATTCGTGTTTTTCCTTTGGGTTTGGATGTTTTTGTTCAAAAGTTATTTGGTCAGTGTGACAACGTTGTCATCAATAACATAATCGCGAGGTTTGATGCCATTGGGGATGCACAATTTGTTCCGGCATCAAAGGAAGCCATTGAATCTCTGGAGAAGCTGAAGATCGAAGATGGTGATGCCATTGAAAAGTGTAGTGTCTGTCAATTCGAGTTCAATGTTGGAATGGAGATTGCAAAAATGCCTTGCAATCATCTGTATCATCAAGAATGCATTGTTCAGTGGCTAGGAACTAGTCACATGTGCCCAATGTGTCGCTACCCAATGCCAACTTCAACCAGTGGCTGA 726 0.405 MMNSMSYNFSWDTFSAPFDENEVRFYQSFEQGHVGDFVRIKVRVKHELCITPQQHPSLILPFDRFLYEQIMFVPYQDFLQHASIYMQVYFPNVIIPHELMYTMLPFLMTYVWDARSSPSGLHYESPRIRVFPLGLDVFVQKLFGQCDNVVINNIIARFDAIGDAQFVPASKEAIESLEKLKIEDGDAIEKCSVCQFEFNVGMEIAKMPCNHLYHQECIVQWLGTSHMCPMCRYPMPTSTSG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2037 241 SUPERFAMILY RING/U-box 175 238 - -
Psa5g2037 241 PANTHER F6A14.12 PROTEIN-RELATED 159 237 - -
Psa5g2037 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 238 IPR013083 -
Psa5g2037 241 SMART ring_2 191 231 IPR001841 -
Psa5g2037 241 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Psa5g2037 241 Pfam Ring finger domain 190 232 IPR001841 -
Psa5g2037 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 159 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2037 Psa-Chr5 157455844 157456827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2037 168 238 C3H Transcription Factor Family AT5G60820 42.857 3.37e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2037 - - adu:110276959 172.17