Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2032 ATGGAACGCGATGAGGGAAAACAATCTTCTCAAAAGAATCCATACACAGAACTTGAGGAAGTTAGCTCTGACTTTCTTCTAGCAATTGGTTTGCAAGAACAAGAGTTAGAGAGAACAACAATCACAAATCTAGCAACCATTGAAAGTGAAAGCGAAGAAGAAGATTTATCAGACGAAGAAGATTTATCAAGCGACTCCTCTTTTATTAATGATGATATTGGTGATGCTGATTTTACTTTGAGCCAGGAGTTCGAAGCAGATCTCCGGTTTCTTGAAGACGAAGAAAGCAATATCGATGACGACGAGGACTACGACGACGATGAAATGGATATAGAAGAAGACGAGGTTGATCCCGATGAATTATCGTACGAAGAGTTGATTGAGTTAGGCGAGTTTATAGGAGAAGAAGCAAGAGGATTATCAAGAAAGGAAATTTCGGCTTGCTTAAATCCTTATAGTTGCAAAACTTCTGAAAGCAAAACTGGAATAGATCTTTGTGTGATTTGTCAGATTGAATATGAAGAAGGTGAAGCTTTGGTTGCACTTCATTGTGATCATCCTTATCATAAAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTATCAAATCCAAACCAGGCTAAGAACACTTGA 660 0.3788 MERDEGKQSSQKNPYTELEEVSSDFLLAIGLQEQELERTTITNLATIESESEEEDLSDEEDLSSDSSFINDDIGDADFTLSQEFEADLRFLEDEESNIDDDEDYDDDEMDIEEDEVDPDELSYEELIELGEFIGEEARGLSRKEISACLNPYSCKTSESKTGIDLCVICQIEYEEGEALVALHCDHPYHKDCISKWLQIKKVCPICSNEVSNPNQAKNT* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2032 219 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 215 - -
Psa5g2032 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 213 IPR013083 -
Psa5g2032 219 SUPERFAMILY RING/U-box 165 212 - -
Psa5g2032 219 MobiDBLite consensus disorder prediction 42 70 - -
Psa5g2032 219 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g2032 219 Pfam Ring finger domain 165 206 IPR001841 -
Psa5g2032 219 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Psa5g2032 219 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 215 IPR033276 GO:0004842|GO:0016567|GO:0046621
Psa5g2032 219 MobiDBLite consensus disorder prediction 48 66 - -
Psa5g2032 219 SMART ring_2 166 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2032 Psa-Chr5 157389224 157389883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2032 113 210 C3H Transcription Factor Family AT3G63530 47.525 4.37e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2032 K19045 - gmx:100526881 255.758