Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2021 ATGGTTTCCGAACTTCAATTGCCACCGGGCTTCCGATTCCATCCAACGGATGAGGAGCTCGTCATGCACTATCTCTGCCGCAAATGCACGTCGCAACCTATCTCCGTTCCGATTATTGCCGAAATTGATCTATATAAGTACGATCCTTGGGAACTTCCCGGCTTGGCTTCTTATGGAGAAAAGGAGTGGTACTTTTTCTCGCCACGAGACAGGAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGTGCGGATAAACCCATAGGTAATCCGAAACCGGTTGGAATCAAAAAAGCGTTGGTTTTTTACGCGGGTAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGCTTGGCTGACGTAGATCGCTCCATTCGCAAAAAGAACAGTTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAAGGAACTATCGAGAAACAACCAAACGGTGTTGTTAGCCGGAAAATTGAGCACTCAGAAGCTGAAGAGAAGAAGCCGGATATTCTGACACGTGGCGGAGGTCTTCCACCACATCCTCCGCCGGCGGGAATGAGGGATTATATGTATTTTGATACTTCGGATTCAATCCCGAAGCTGCACACGGATTCGAGTTGCTCGGAGCACGTAGTGTCGCCGGAGTTTGCAAGCGAGGTGCAAAGCGAACCTAAGTGGAACGAGTGGGAAAAGAGCCTTGAATTTCCTTATAATTACTTGGATGCCACTCTGAATACTGGTTTTGGATCTCAATACCCGAGCAATAATCAGATGTCGCCGTTGCAGGATATGTTCATGTACTTGCCCAAAACCTTTTGA 864 0.4769 MVSELQLPPGFRFHPTDEELVMHYLCRKCTSQPISVPIIAEIDLYKYDPWELPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGNPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTIEKQPNGVVSRKIEHSEAEEKKPDILTRGGGLPPHPPPAGMRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKSLEFPYNYLDATLNTGFGSQYPSNNQMSPLQDMFMYLPKTF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2021 287 PANTHER NAC TRANSCRIPTION FACTOR 56 4 265 - -
Psa5g2021 287 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Psa5g2021 287 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 4 265 - -
Psa5g2021 287 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Psa5g2021 287 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Psa5g2021 287 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2021 Psa-Chr5 155985429 155987381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2021 1 287 NAC Transcription Factor Family AT1G01720 71.959 3.39e-149 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g2021 NAM 2.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2021 - - gmx:100805768 500.745