Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2020 ATGGCGGAGGGAATCCACTCTATGGACATCGACGGCGCCGACCTAACCAACTCTTTCTCTGCAAACCTCGATAAGGGCAAAACTGTCATTCTAGCCGGCAACCCTTCCCACGGCGGCAAGGCCTCTCTCTGGGTCGAAAAATACCGTCCTCAGTCCCTCGACGACGTCGCTGCTCACCGTGACATTGTCGACACTATTGATAAATTGACCACTGAGAACAGATTACCCCATCTTTTGCTGTATGGTCCTCCTGGAACTGGCAAAACATCAACTATTCTCGCTGTTGCTCGCAAACTATACGGTCCGCAATACCATAATATGATTTTGGAGCTCAATGCTTCAGATGATAGAGGAATTGATGTTGTTAGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGCGTCAAGCCTTCTGTAAAACTGGTCTTGTTAGATGAAGCAGATGCCATGACTAAGGACGCCCAATTTGCATTGCGTAGAGTTATTGAGAAATATACAAAGAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCTGCATTGCAATCAAGATGCACTCGGTTTCGGTTTGCTCCTCTTGATGCTGTACATGTCTCTGAAAGACTGAAACATGTTATTAATGCTGAAAGGCTTGATGTTCAAGACAGTGGTTTGTCTGCTCTTGTTCGACTTAGTAATGGTGATATGAGAAAGGCGTTGAATATTCTTCAGTCAACACACATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTTTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCATACTGGCTTCTAAATGAACAATATTCAGATAGCTTTAAAAGAATTAATGATATGAAAACAAGGAAAGGACTGGCCCTTATTGATATTGTAAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGCTGTTCGAGTGCAGTTGGTGAATGATTTGGCTGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTAGGTTCAGTTGTTGCTTCATTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTGCATAA 1098 0.4271 MAEGIHSMDIDGADLTNSFSANLDKGKTVILAGNPSHGGKASLWVEKYRPQSLDDVAAHRDIVDTIDKLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVSERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSDSFKRINDMKTRKGLALIDIVREVTMFVFKIKMPPAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTRARSALVAAAA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2020 365 Gene3D - 204 265 - -
Psa5g2020 365 Pfam ATPase family associated with various cellular activities (AAA) 78 198 IPR003959 GO:0005524|GO:0016887
Psa5g2020 365 Gene3D - 37 200 IPR027417 -
Psa5g2020 365 SUPERFAMILY post-AAA+ oligomerization domain-like 266 356 IPR008921 GO:0003677|GO:0006260
Psa5g2020 365 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 38 361 - -
Psa5g2020 365 Pfam Replication factor C C-terminal domain 266 352 IPR013748 -
Psa5g2020 365 Gene3D - 266 363 - -
Psa5g2020 365 PANTHER REPLICATION FACTOR C SUBUNIT 5 38 361 - -
Psa5g2020 365 SMART AAA_5 74 204 IPR003593 -
Psa5g2020 365 CDD AAA 62 200 - -
Psa5g2020 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 259 IPR027417 -
Psa5g2020 365 CDD HLD_clamp_RFC 201 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2020 Psa-Chr5 155977266 155984596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2020 1 364 Core DNA Replication Machinery Family AT1G77470 76.613 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2020 K10756 - gmx:100782652 615.15