Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2018 ATGGTGTTTGACGGAGAAGCCGCGTCGTCGCTGGTGAAGGAACTGAGGGTGAGTTTCAGTTCCGGTAAGACGCGAAGTTACGAATGGAGAATATCGCAGGTGAAGGCTCTTTTGAAAATGATGGCTGAACAAGAGGATGAAATCGTTGATGCTCTTCGTTCTGACCTTGCTAAACCGCCACTCGAAACCGTCGTCTACGAGATTGGTATGTTTAAAAACTCATGTGAACTCGTGCTCAGGGAATTGAAACAATGGATGACACCAGAAAAGGCTAAAACTTCAATCACAACTTTTCCGTCTTCGGCTGAAATCATACCTGAACCACTTGGTGTTGTGTTAGTCATCTCCGCGTGGAACTATCCAATTTTTGTTGTCCTTGATCCAGTTGTCGGAGCTATAGCAGCTGGTAATGCTGTGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGGACGGATAGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTTGTTCTTGAACTTGGAGGAAAATCTCCAACTGTTGTTGATTCAAATGTCAATTTAGAGGTTGCTGCAAGACGGATCAATTTTTCTGGCAAATGGGGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTATCTTATAACAACAAAAGAATTTGCTCCGAAATTGGTAGAAGCGTTAAAGACTGAATTGGAAAACTGCTTTGGAAAGAACCCAATAGAATCGAAAGATTTGTCGCGCATTGTGAACTCTAACCACTTTGCTCGCTTGTTAAAGTTCTTGGACGAGGATAAGGTTTCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTGAGGATTGCTCCAACTATTTTATTAGACGTTCCACAAGATTCTCTGATAATGAGTGAGGAAATCTTTGGTCCATTGCTTCCGATAGTCACGGTGAATAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACACACGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATCTTGTGGTTCATACATTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGAAAATTCTCCTTTGATGCTTTTACTCACAGAAAGGCAGTTCTTTATCGCGGGTTTACAGGTGATTCATCGATAAGGTACCCACCTTACACTGACACAAAGCAGAAAATGATGAAGGCTCTAGTCGCCGGTGATGTTCCTGGTGTAGTTCGTGCGCTTATTGGATGGTCCTAA 1311 0.4287 MVFDGEAASSLVKELRVSFSSGKTRSYEWRISQVKALLKMMAEQEDEIVDALRSDLAKPPLETVVYEIGMFKNSCELVLRELKQWMTPEKAKTSITTFPSSAEIIPEPLGVVLVISAWNYPIFVVLDPVVGAIAAGNAVWDKIFYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVAARRINFSGKWGCNNGQACISPDYLITTKEFAPKLVEALKTELENCFGKNPIESKDLSRIVNSNHFARLLKFLDEDKVSGKIVYGGEKDESKLRIAPTILLDVPQDSLIMSEEIFGPLLPIVTVNKLEESFDLINAGTKPLAAYLFTHDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHRKAVLYRGFTGDSSIRYPPYTDTKQKMMKALVAGDVPGVVRALIGWS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2018 436 PANTHER ALDEHYDE DEHYDROGENASE 2 139 - -
Psa5g2018 436 PANTHER ALDEHYDE DEHYDROGENASE 140 436 - -
Psa5g2018 436 PIRSF ALDH 2 140 IPR012394 GO:0006081
Psa5g2018 436 PIRSF ALDH 139 430 IPR012394 GO:0006081
Psa5g2018 436 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 17 139 IPR016162 GO:0016491
Psa5g2018 436 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 140 391 IPR016162 GO:0016491
Psa5g2018 436 PANTHER ALDEHYDE DEHYDROGENASE 140 436 IPR012394 GO:0006081
Psa5g2018 436 PANTHER ALDEHYDE DEHYDROGENASE 2 139 IPR012394 GO:0006081
Psa5g2018 436 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 168 175 IPR029510 GO:0016491
Psa5g2018 436 SUPERFAMILY ALDH-like 11 401 IPR016161 GO:0016491
Psa5g2018 436 Coils Coil 34 54 - -
Psa5g2018 436 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 172 373 IPR016163 GO:0016620
Psa5g2018 436 Pfam Aldehyde dehydrogenase family 141 393 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2018 Psa-Chr5 155958539 155961056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2018 68 434 Aldehyde Dehydrogenase Gene Family AT1G44170 62.379 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2018 K00128 - gmx:100783726 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2018 5 155958539 155961056 Psa5g2018 5 155958539 155961056 ECH