LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2007	ATGATGCTGCAGCAGCAACAACAACAAGTGAGTAATGGTAACAACAATCGCATAGTTGCCGTAAATGTAACACCTTCTGGCACACCATCTCCTAACCATGACTCTTCGAAGCTCGATCAGACACCAGGATGGAAAAAGTTCTTTACATATGTTGGTCCTGGTTTTCTTGTCTCTTTGGCCTACCTTGATCCTGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCATGGTTATGAGCTGTTGTGGATTATACTTATTGGACTCATATTTGCACTTATCATTCAATCATTGGCTGCAAATCTTGGAGTATGCACCGGAAAACACCTTTCAGAAGTCTGTAAGGCTGAATATCCATTATTTGTTAAGTATTGTTTATGGATATTAGCAGAACTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACAGCATTTGCTCTTAACATACTATTTCACATTCCTGTATGGGGAGGAGTTCTGTTGACTGGATGCAGCACTCTCTTGTTTTTAGGCCTACAAAGATTTGGAGTAAGAAAGTTAGAACTGCTGATATCAATCTTAGTTTTTGTAATGGCGGCATGTTTCTTCGGAGAAATGAGCTATGTAAAACCTCCGGCTGCTGGTGTAGTCGAAGGAATGTTCGTCCCTAAACTCAATGGAAATGGCGCCGTAGCCGATGCTATCGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTTCTCCACTCTGCTCTAGTGTTATCTAGAAAAATACCTGGTTCTAAGCGCGGCATCAATGATGCATGTAGATACTTTCTCATTGAGAGTGGTTTCGCTTTATTTGTCGCATTTCTAATCAATGTTGCAATGATTTCTGTGTCTGGCACTGTTTGTACTGCCAAAGACATTTCTGCTGAAAATGTTGAACGCTGCAGTGATCTTACTCTTAACTCTGCTTCTTTTCTTCTCAAGAATGTATTGGGACGCTCAAGCTCGATAATTTACGCCATAGCATTGTTAGCTTCTGGACAGAGTTCTGCCATTACTGGAACATATGCAGGCCAATTTATCATGCAGGGTTTTTTGGACTTAAAGATGAAAAAATGGGTTAGGAACTTGTTGACTAGGATTGTTGCCATAGCACCTAGTCTTGTTGTCTCTATCATTGGTGGTTCTTCCGGAGCTGGAAGACTTATCATCATCGCATCGATGATTCTTTCTTTTGAACTTCCATTTGCTTTGATTCCACTGCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCAATGATTATCATTGTCATCTCATGGATATTAGGTTTGGGAATCATTGGTATCAATGTGTACTACCTCATTACTGCTTTTGTGGGCTGGATAATTCATAGCAGTCTACCAAAAGTGGCAAATGTTTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTATATATTGTCTCAGTTATCTATCTAACCTTTAGAAAAGACACTGTTAAAACATTTGTTGAGGTTAAGGATGACCCAACAATGCAAACCCATATGGAAAAAGGATTCGTAAACGATGGTCAATTAGAGTTGAGTAATGCTCCTTATAGAGAAGATTTAGTTGATATTCCACTGCCAGAGGGACCTAGATTATGA	1638	0.4029	MMLQQQQQQVSNGNNNRIVAVNVTPSGTPSPNHDSSKLDQTPGWKKFFTYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEVCKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPAAGVVEGMFVPKLNGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGINDACRYFLIESGFALFVAFLINVAMISVSGTVCTAKDISAENVERCSDLTLNSASFLLKNVLGRSSSIIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWVRNLLTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLITAFVGWIIHSSLPKVANVFIGIIVFPLMALYIVSVIYLTFRKDTVKTFVEVKDDPTMQTHMEKGFVNDGQLELSNAPYREDLVDIPLPEGPRL*	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	126	152	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	154	173	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	179	200	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	229	252	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	339	358	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	367	384	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PRINTS	Natural resistance-associated macrophage protein signature	399	418	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	46	421	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	Pfam	Natural resistance-associated macrophage protein	68	429	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	37	541	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2007	545	PANTHER	METAL TRANSPORTER NRAMP5	37	541	-	-
	Psa5g2007	545	Hamap	Divalent metal cation transporter MntH [mntH].	31	455	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2007	Psa-Chr5	155332703	155335569	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2007	6	519	Inorganic Solute Cotransporters	AT1G80830	59.808	0.0	619

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2007	K21398		-	gmx:100787785	863.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g2007	5	155332703	155335569	Psa5g2007	5	155332703	155335569	ECH