LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2006	ATGGAAACATCTTCAAATCATGAGACGCAGAAATCTGGATGGAAAAAGTTTTTGCCATATATTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGACCCTGGAAACATGGAAACTGATTTGCAAGCCGGAGCTAACCACGGATATGAGCTGCTGTGGTTGGTTCTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACCACCGGCAAGCACCTTTCGGAAGTATGTAAAATTGAATATCCATTATTTGTGAAGTATTGTTTATGGTTATTAGCAGAAGTTGCTGTCATAGCTGCTGACATACCAGAAGTGATTGGGACAGCTTTTGCACTTAATATACTATTCCATATCCCATTGTGGGCAGGAGTTCTGTTGACTGGTGGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACACTCCTAGTATTTGTAATGGCAGCATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTTCTGGTGTACTTAAGGGAATGTTTGTGCCTAAACTTTCCGGTGAAGGAGCCGTAGGCGATGCTATTGCCCTTTTGGGTGCCCTTATTATGCCGCACAATCTTTTCCTCCATTCTGCCCTGGTGCTATCTAGAAAAGTACCTAGTTCTGGGAGAGGCATCAAAGATGCATGTAGATACTTTCTCTATGAGAGTGGATTCGCTCTGTTCGTTGCGTTTTTAATCAACGTTGCAATGATTTCTGTGTCAGGCACAGTTTGCTCTGCCAATGATCTTTCTAAAGACAATGTTGAACACTGCAGTGATCTTACCCTTAATTCCGCTTCTTTTCTTCTAAAGAATGTGTTGGGACGATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCTGGACAAAGTTCTACCATTACTGGAACATATGCAGGGCAGTACATTATGCAGGGTTTCTTGAACATAAGGATGAAAAGGTGGAAAAGGAATTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTGCCATTGTTGGCGGTTCTTCGGGCTCTAGTCGGCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAATTTAGCAGTAGCAGTACCAAGATGGGAACTCACAAGAATTCAATGATTATCATAACTATCTCATGGATATTAGGCTCTGGGATCATTGGTATCAATATTTACTACCTCAGTACGGCCTTTGTGAAGTGGCTAATTCATAGTAATCTACCAAAGGTTGCAAATGTGTTCATTGGCATTATAGTGTTTCCACTAATGGCAATTTATATTGTCTCGGTTATCTACCTTACCTTCAGAAAAGACACCGTTCAAATAGTTATGGAGACGAAGAATGATACAGTAATGCAAAACCAAGTGGAAAAGGGAGTTTTGGATCAAGATCAGATAGAATTGAGCCATGTTCCCTATAGAGAAGACTTAGCTGATATCCCACTTCCGGAATAA	1536	0.4147	METSSNHETQKSGWKKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKIEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGGSTLLLLSLQRFGVRKLELLITLLVFVMAACFFAEMSYVNPPASGVLKGMFVPKLSGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPSSGRGIKDACRYFLYESGFALFVAFLINVAMISVSGTVCSANDLSKDNVEHCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGTHKNSMIIITISWILGSGIIGINIYYLSTAFVKWLIHSNLPKVANVFIGIIVFPLMAIYIVSVIYLTFRKDTVQIVMETKNDTVMQNQVEKGVLDQDQIELSHVPYREDLADIPLPE*	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	96	122	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	124	143	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	149	170	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	199	222	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	309	328	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	337	354	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PRINTS	Natural resistance-associated macrophage protein signature	369	388	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	7	511	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	Pfam	Natural resistance-associated macrophage protein	38	399	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	15	391	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Psa5g2006	511	PANTHER	METAL TRANSPORTER NRAMP5	7	511	-	-
	Psa5g2006	511	Hamap	Divalent metal cation transporter MntH [mntH].	4	425	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2006	Psa-Chr5	155210102	155214151	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2006	1	511	Inorganic Solute Cotransporters	AT1G15960	58.755	0.0	621

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2006	K21398		-	gmx:100787785	816.224

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g2006	5	155210102	155214151	Psa5g2006	5	155210102	155214151	ECH