Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2003 ATGGCGCCAATCATCCAAAGCACTCAACCATGGGTCGAGAAATATCGCCCAAAGCAAGTGAAAGACGTTGCTCACCAAGAAGAAGTAGTTCGAGTTCTCACCAACACCCTCGAAACCGGTAGTTGCCCCCACATGCTCTTCTATGGTCCTCCCGGCACCGGAAAAACCACCACCGCCCTCGCCATCGCTCACCAGCTTTTCGGGCCTGAGCTTTATAAATCTAGGGTTTTGGAACTAAATGCTAGTGATGATCGTGGTATTAATGTTGTTCGGACTAAGATCAAGGATTTTGCAGCTGTGGCTGTCGGTACCAATCAGCGGAAGAATGGTTATCCTTGTCCGCCGTATAAGATAATTGTTCTTGATGAGGCGGATTCAATGACAGAAGATGCTCAGAATGCGCTGAGGCGTACGATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCCAAATTCAGGTTCAAGCCACTGACAGAAGAAATCATGAGCAGCCGAATATTATACATCTGCAAAGAAGAAGGAATCTACCTTGATGCTGAGGGTCTTTCAACCCTAAGTACCATTTCTCAAGGAGATCTTCGCCGGGCTATAACATACTTGCAGTCCGCTGCTCGTTTATTTGGATCTTCCATCTCTTCGAAGGACCTGATTTCTGTTTCTGGGATTGTTCCGGCAGAAGTTGTTGAGGCACTTCTTAAAGCATGCAAAAGTGGTAATTTTGATTTAGCCAACAAGGAAGTCAACAATTTCATTGCAGAGGGGTATCCTGTCTCTCAGATGCTAACTCAGTTGTTTGAGGCTATTGTTGAAGAAAATGACATATCTGATGAACAGAAGGCCAGAATATCCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACCTGCAGCTTCTTGGTGTTGTTAGCATTACAATACAGGCTTTATGTAACATGCCAGAAGGATTTGCTTACTAG 1023 0.4428 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRILYICKEEGIYLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALLKACKSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLGVVSITIQALCNMPEGFAY* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2003 340 Gene3D - 240 329 - -
Psa5g2003 340 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Psa5g2003 340 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Psa5g2003 340 SMART AAA_5 41 174 IPR003593 -
Psa5g2003 340 Gene3D - 3 173 IPR027417 -
Psa5g2003 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Psa5g2003 340 CDD HLD_clamp_RFC 174 233 - -
Psa5g2003 340 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 329 - -
Psa5g2003 340 PANTHER REPLICATION FACTOR C SUBUNIT 4 5 329 - -
Psa5g2003 340 Gene3D - 176 239 - -
Psa5g2003 340 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Psa5g2003 340 CDD AAA 26 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2003 Psa-Chr5 155059211 155063772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2003 1 338 Core DNA Replication Machinery Family AT1G21690 77.876 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2003 K10755 - gmx:100798331 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2003 5 155059211 155063772 Psa5g2003 5 155059211 155063772 ECH