Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1999 ATGTTTACCCGAAGCAGACGCTTCCCTTCATCTTCTTCATCCTCCAAGAATTCAGATGATTCAATTTCAAACAAAAAGGTCATCAATGCCGTCAAGACTCAGTTAACGAAGAAACGTCCCGCTCTCGCTGAAGTGACCAATAGCACAAATGCTTCTCTCGTCAAAACCTCCGTTGGTGCTCCATCGAAACCTATGGTGCCGTGCGTATCCAAAACTGCAAAGACAAAGAAGGATTCTATTGCGAATTCAAAGAAAAATGTTATGTCTAAGAACACTTTGCAGCCCCCATTAAGAGTCAAATCAGGTGAATTGGTGCCTGCTAAAGAGGCATGTTTGACCAAAAATAGTCAAACTAAGTCTGAAGTTCAAGCCGCCATTGTACCAAGCAATGATGGTGCTGTTTGTCCTGATATTAAGAGTGTGGTCTGTGCTCCAAGATGGATGGACATTTCTCCTAGTAACACCTGTAGTGGTTCTGTTTCACTAGATGAGAGCATGTCAACCAGTGATTCTTTGATGACTCCGGAATTCAAATATACTGGCAATGGCGATGTTGCGTCGATCAAATCAATTGAAAATAGGACGAACAACATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACAAGATATTGACACCATACTGAAGTCAAGAGCAAATGAAATTGTTGACATTGACTGCAATTTCAAAGACCCACGGTTTTGTGCATCCATTGCCAATGAAATCTACGAAAATTTGCGTGTATCTGAGAAAATTAAAAGGCCATCTATAGACTTCATGGAGAAGATACAGACAGACATCAATGCCAGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCTGAAGAGTACAGACTTCTACCTGATACACTATTTTTGGCAGTTAACTACCTTGATCGCTATCTCTCAGGCAAAGCAATGAACAGACAGCGGTTACAACTACTTGGTGTTTCCTGCATGATGATTGCCGCTAAATACGAGGAGATCTGTTCCCCCAAGGTGGAAGAGTTCTGTTATGTTACTGATGATACATATTCTAAGGAGCAGATGTTAGAGATGGAGTCCTCTGTGCTGAATTTTTTGAAGTTCGAAATGACAGCTCCTACAACTAGATGTTTTTTGAGACGCTTCATTACGGTTGCCCAACAAACATGTGAGGTTCCTCTGATGCAGTTGGAGTATTTGGCCGACTATCTAGCAGAGTTATCGCTTATAGAGTATGATATGCTTAAGCACACCCCGTCACTAATAGCTGCATCAGCTGCTTTCTTGGCTAAATATATACTACTTCCTAGCGAGAAACCTTGGAATTCCATGCTAAGGCATTACACAGGCTATCAAGAATCAGAATTGCGTGAATGTGTTAAGGGACTGCATTTGTTGTACTGCAATGGCTATCATAATTCACCTTCCATTACTGCTATCAGAGAGAAATACAGTGAGCATAAGTTCAAGTTTGTGGCAAAGAAGTATTGTCCTCCATCAATACCAGTAGAAGTATTTCACAACTGA 1527 0.4132 MFTRSRRFPSSSSSSKNSDDSISNKKVINAVKTQLTKKRPALAEVTNSTNASLVKTSVGAPSKPMVPCVSKTAKTKKDSIANSKKNVMSKNTLQPPLRVKSGELVPAKEACLTKNSQTKSEVQAAIVPSNDGAVCPDIKSVVCAPRWMDISPSNTCSGSVSLDESMSTSDSLMTPEFKYTGNGDVASIKSIENRTNNILNISDSSKMAGRIQDIDTILKSRANEIVDIDCNFKDPRFCASIANEIYENLRVSEKIKRPSIDFMEKIQTDINASMRAMLIDWLVEVAEEYRLLPDTLFLAVNYLDRYLSGKAMNRQRLQLLGVSCMMIAAKYEEICSPKVEEFCYVTDDTYSKEQMLEMESSVLNFLKFEMTAPTTRCFLRRFITVAQQTCEVPLMQLEYLADYLAELSLIEYDMLKHTPSLIAASAAFLAKYILLPSEKPWNSMLRHYTGYQESELRECVKGLHLLYCNGYHNSPSITAIREKYSEHKFKFVAKKYCPPSIPVEVFHN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1999 508 Gene3D - 258 371 - -
Psa5g1999 508 CDD CYCLIN 371 464 IPR013763 -
Psa5g1999 508 ProSitePatterns Cyclins signature. 275 306 IPR006671 -
Psa5g1999 508 PANTHER CYCLINS 26 507 IPR039361 -
Psa5g1999 508 CDD CYCLIN 274 363 IPR013763 -
Psa5g1999 508 Gene3D - 244 494 - -
Psa5g1999 508 SUPERFAMILY Cyclin-like 233 370 IPR036915 -
Psa5g1999 508 SMART cyclin_7 280 364 IPR013763 -
Psa5g1999 508 SMART cyclin_7 377 465 IPR013763 -
Psa5g1999 508 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Psa5g1999 508 SMART Cyclin_C_2 373 498 IPR004367 -
Psa5g1999 508 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g1999 508 Pfam Cyclin, C-terminal domain 373 494 IPR004367 -
Psa5g1999 508 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 26 507 - -
Psa5g1999 508 PIRSF Cyclin_A_B_D_E 3 139 IPR039361 -
Psa5g1999 508 PIRSF Cyclin_A_B_D_E 152 507 IPR039361 -
Psa5g1999 508 SUPERFAMILY Cyclin-like 373 500 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1999 Psa-Chr5 155034866 155040188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1999 29 508 Core Cell Cycle Gene Families AT1G44110 48.866 4.55e-155 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1999 K06627 - jre:108999040 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1999 5 155034866 155040188 Psa5g1999 5 155034866 155040188 ECH