Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1998 ATGTCAAGTCATAATAATAATAATAATAATAATCGTCGTTCATCGTTTTCTTCTTCAACGACGTCGTCTATGGCAAAACGTCACCCTCCGGTCACCGAGAACGTCGCCGGAAAAGTTTTAGCCTCTGCCAAGAAACGTCCTCCTCTCACAAACCTCACCAATCACAATGCTTCTCGTAACTCATCCACTTTGCGATTAAGCGATTTTTATTATTTTTTGCAGGTGACTAAAGTTGCAAAGACCAAGAAAGAACCTTCAATTTCCGGCAACAAAAAACCTACTTTTTCCAATGTTAAATCAGCTACGGTTGTTTTTCCTAAGGCTATTTCTACTACTACTACTAGTGCTTCCAGTTCTTTTTCTGAAAGGAATGAAGCTGTTTTTCCGTTAGTTTCAACTACTTTCAATGTTCCTGTGGTTTCGAGTTGTATGGATTTATCGTCCCCCAGTAAATCCGACGGAATGTCGGTTTCGATGGATGAGACAATGTCGTCTTGTGATTCTTTTAAGAGTCCTGATATTGAGTATGTGGATAACAGCGATGTTCCGGCGGTTGATTCGATTGAGAGGAAGACTTACTGTAGTCTTAACATTTCTGATTCTGATTACCCAACAGGTAATGTTTGTAGTAGAGACATTCTTGTTGAGTTGGAAAAGGGGGAGAAAATTATTGATATTGATGATGATCATGTGGATCCTCAGCTTTGTGCATCGTTTGCTTGTGATATCTACAAGCATTTGCGTGCTTCTGAGGTAAAGAAAAGACCATCCACAAACTTCATGGAGAAAATTCAGAAGGATATAAATCCCAGCATGCGTGCTATATTGATTGATTGGCTAGTGGAGGTGGCTGAAGAATATAGACTTGTACCAGATACATTGTATTTGACAGTAAACTACATAGATCGGTATCTCTCTGGGAATGCCATGAATAGGCAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAGTTTTGTTATATAACTGATAATACATACTTCAAGGAAGAGGTTTTGCAGATGGAATCTACTGTCTTGAATTTTTTGAAATTCGAAATGACTGCCCCAACAATTAAATGCTTCCTGAGAAGATTTGTACGTGCTGCTCAAGGAATTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAACTACATTGCCGAATTATCCCTGTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCAAAATTTATGCTATTCCCTTCGACGAAACCATGGAATTCAACATTGCAGCATTACACTCAATACCAAACATCTGATTTGTGTGCTTGTGTAAAAGATCTCCATCGTCTTTGTTGTAACAGCCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTACAAGTATGTGGCCAAGAAGTACTGTCCTTCATCAATACCCCAAGAGTTTTTCCAGAATTGA 1515 0.3901 MSSHNNNNNNNRRSSFSSSTTSSMAKRHPPVTENVAGKVLASAKKRPPLTNLTNHNASRNSSTLRLSDFYYFLQVTKVAKTKKEPSISGNKKPTFSNVKSATVVFPKAISTTTTSASSSFSERNEAVFPLVSTTFNVPVVSSCMDLSSPSKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTYCSLNISDSDYPTGNVCSRDILVELEKGEKIIDIDDDHVDPQLCASFACDIYKHLRASEVKKRPSTNFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGIDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASSIFLAKFMLFPSTKPWNSTLQHYTQYQTSDLCACVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPSSIPQEFFQN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1998 504 Gene3D - 256 369 - -
Psa5g1998 504 SMART cyclin_7 375 463 IPR013763 -
Psa5g1998 504 SMART cyclin_7 278 362 IPR013763 -
Psa5g1998 504 CDD CYCLIN 272 361 IPR013763 -
Psa5g1998 504 PANTHER CYCLIN-A1-1 34 503 - -
Psa5g1998 504 SMART Cyclin_C_2 371 494 IPR004367 -
Psa5g1998 504 ProSitePatterns Cyclins signature. 273 304 IPR006671 -
Psa5g1998 504 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g1998 504 SUPERFAMILY Cyclin-like 371 496 IPR036915 -
Psa5g1998 504 SUPERFAMILY Cyclin-like 232 368 IPR036915 -
Psa5g1998 504 PANTHER CYCLINS 34 503 IPR039361 -
Psa5g1998 504 CDD CYCLIN 369 462 IPR013763 -
Psa5g1998 504 Gene3D - 242 490 - -
Psa5g1998 504 Pfam Cyclin, N-terminal domain 242 368 IPR006671 -
Psa5g1998 504 Pfam Cyclin, C-terminal domain 371 490 IPR004367 -
Psa5g1998 504 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1998 Psa-Chr5 154883318 154885905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1998 11 504 Core Cell Cycle Gene Families AT1G44110 59.200 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1998 K06627 - gmx:100789565 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1998 5 154883318 154885905 Psa5g1998 5 154883318 154885905 ECH