LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g1993	ATGAGCTTCTTGAGTACAACTTTGATGATGAATTATCCTTCCTTTCGATGGATGCCTTGTCAGAGTTGGAGTTTCCTTCGATGGCCAGGTCTCGAAGCCTTCTTCAGACTTGTCGTCGTTTTTCTTCTTTGGTCTACCTTCTCTCATCTCTGCTATATACCTTCTTCTTCTATGTACCCTACCCTACGTGTTGGTGATCGAATTATAGTCGAAAAGGCATCATATTACATTAAAAGTCCTGCTATAAGGGATATTGTAACATTTCGTGATCCAACACAGCATTCTGGAGAGAACACAAATGTTTTTATCAAGAGAATTGTTGCGAAAGAAGGAGACACTGTTGAGGTTCATCATGGAGTACTCTATGTCAATGGTGTTGCTCAAGAGGAGAATTTTGTGATTGAGGCACCAACATACACAACGAAATTAACTTATGTGCCAAAAGGCCATGTTTATGTTATGGGGGATAATCGCAATAATAGCTATGATTCACATGTATGGGGACCACTTCCTATGAAAAACATAGTTGGAAGATATGTCATGTGCTGTCATAGACCAACAAATTGA	567	0.3951	MSFLSTTLMMNYPSFRWMPCQSWSFLRWPGLEAFFRLVVVFLLWSTFSHLCYIPSSSMYPTLRVGDRIIVEKASYYIKSPAIRDIVTFRDPTQHSGENTNVFIKRIVAKEGDTVEVHHGVLYVNGVAQEENFVIEAPTYTTKLTYVPKGHVYVMGDNRNNSYDSHVWGPLPMKNIVGRYVMCCHRPTN*	189

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g1993	188	ProSitePatterns	Signal peptidases I signature 3.	151	164	IPR019758	GO:0004252\|GO:0016021
	Psa5g1993	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	46	62	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Psa5g1993	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	102	114	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Psa5g1993	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	146	165	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Psa5g1993	188	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	7	188	-	-
	Psa5g1993	188	ProSitePatterns	Signal peptidases I serine active site.	55	62	IPR019756	GO:0004252\|GO:0016021
	Psa5g1993	188	SUPERFAMILY	LexA/Signal peptidase	47	181	IPR036286	-
	Psa5g1993	188	PANTHER	SIGNAL PEPTIDASE I	7	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Psa5g1993	188	Pfam	Signal peptidase, peptidase S26	33	181	IPR019533	GO:0004252\|GO:0006465
	Psa5g1993	188	Gene3D	Umud Fragment, subunit A	55	186	-	-
	Psa5g1993	188	CDD	S26_SPase_I	52	178	IPR019533	GO:0004252\|GO:0006465
	Psa5g1993	188	TIGRFAM	sigpep_I_bact: signal peptidase I	36	182	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g1993	Psa-Chr5	154561850	154564598	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g1993	58	178	MADS-box Gene Family	AT1G29960	34.677	1.84e-10	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g1993	K03100		-	gmx:100306121	306.219

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g1993	5	154561850	154564598	Psa5g1993	5	154561850	154564598	ECH