Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1975 ATGGGCTCTTGTGGTGAACCTGCAATTGTTGGTGATCCTGTTGGCTTGTCTGTAATTGAGCAGCAGCCTTTGAACTCGGGGTTTCCGGCTCGGTTTGATTCTGTGGAGGAGTCGTGTTCGGAAGATCCTTGTAATGTTTTAGACCTTTCTGGTATGGCTGATGGTTTTATGGAAGATGGTCATGTGGGTTGTTCTGGAAGTTTTGTTGATGTTACTGAGGGGTCTGGAGATGGTTTGAGAAATGAATGTGAGATTGATGATTTATTACAGTTGGAGATGGGTGCTGAAGATGGTTGTCAAAATAGTTTGGGGGTTTGTTCTGAGGATATTGATGTTTCTGATTTTATAAGTGATGGACTGCACTCGGAGGGAAATTTTCAAGATGAAGGGAATGTCGACCTGCCAAATAATTTGCAGAAGCATTGTGCTGAACAGGGGGAGCAGAAGGACGAGAAGAGTGTTGTTTTATCATTGGCAGGAGATGATTCGGAAGTTGTGGAGGGCAAAAACGACGGTGCTGATTTGATAGCAAGTGCTGTCAACTGTGTGCTTGAAGCTGCGCATTCTGACGTTTCCCTTGAGTCAGATTTCATGAGAGATTGGCTAGTTGATTGCATCCAGAAAAATGAGCCAGAGGGGGAGATTATGAGAAATGCAGAGAGCTTGCCAAAGGTTGTAGGAAATTGTGATTATGATGGTTTAGATGGGATGGAAGCCAATTCTTGCTGGCAGATATCTTCTTCGTTGGATGTGGAAGTGCCGTCAGGTGCTTTATTTATAGACACAAAACTAGAAAGCACAAGTGATAAGCTGCACAATCAAAAAAATGGTGTGGATTGTGACAGTGCTTGCGAAGAAAAGATAAGAGCCACTGTTGATAAAGAAATCACTGATAATTCACGTGTACAATCATCACCCTCACCAGATTTAATTAGGACCTCGAGGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCCTGCCGGATCCAGGGAGTGAATTGAAGAATGACATATTGCAAATAGAAGATAATTTCTGTATATTGAAGGATTGTTCTGCAGATGGAACTGCTAACTCTACCATTAGAAAACCATTTTATCCCGAATCAGGCCAGTCCTCTTCTGTTTTAGTCACCAGTAGCTCTCCAAAGGATGTGCCAGATCTTCTTTCCAAGGGTAACAGTGTTTCCATCAAGGATACTTGTGCTGCAGACAATCCTGGACAGACAAATAATGATGGACAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAAAGTAACAGTCAAACAACCGAATTTGGTCGTAATACACAAACCAGAAAGGCTTCTAGAAAATCCACAAACAAAGCCAGTGTAACACATCCAAGCGGGGGTATGAAGATAAACTTAGAGGCTTCTAGGAAAAAAAGAAGTTGTTCATCCAAACCAGGCCGTTCTTCTGCCTGGGGATTAATGGGGAATATTGAACAGTTTTTTCAGTATGAAAATGAGCTTGAGGTTAGTGAAGCCATGTGCCAGAATGTTGGAAAGGCTAGAAACAACTGTCAAGGTGGGAAAACAACTAAAAATAGTACAAGTTCTAGCTCATTAAGTTCAGTTCCAAAGTATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAAATCAAGTATGGAAAAGAAAATGATTTACCGGCTTCTGCTTCCTACAATGGGCCTGATTCAGGTTCCCAGAAAGTAATCAGCAATTCTGCCGATAAAGTTTCTGTAGTGTTGGCTTTAAACAGTTTAGGATCATTCAGAAATGACCCAGACAAGGATTGTGTGGTTCTAAACGGACACACCGTAAATAGCCAGTTAGAAAATTCTAAAATAACAGAGAAGTCAGAAGGGGATGTAGAAGAACCATGTCATGCAGTTCCTCCAGAGAGAGTGGTTGAAGCATTAGTTAAGCCAATTAATAATTCAGCTACAGATCCCGGAACATCACCTGATTCAGAAGTCATTGATTCAATTCCTGAAGTCCAGGTTGGAGAAAGACATGAAGATGTACATCTTGACGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATCAGGATGTTACCTTCCAGAAGAGAGGGAAGAAGAAAGACAAGCCTATTGGTTCAGGCAATTGTATCACAGAGGATGCATCACATGGTCAACTAGGTAATAATGGAGCTGTGCATTCAAAGAATCATAGACATAAGAACTGTAACGATGTGGCTAGCTCTCTAGAATTGTCTACTTCCACTGAGCTAAGCAAATCTATAAAGAGTAAAGAATTGGCTGCAGAATCATTGCCCCTTTCTGGAGAGACTGTACTTGGAGGTTCCGCCAAGGCTTTGAAAGCTAAAAGTCACGCAACAGTCAAGACAGTTGGCAAAACGTTTGGTGGTCATGAATTTTCTAAATTCCAGGGTTCCGAGGATTTGCCGTCTTCTACAAGACCGTTGGGTCGTAAACTACCTAAAAGTCTTGAACCTACTAGTAAATTTAGCAAGGCCAAATCCAACGGTTCTGACTCGACAAGCAGGAAAAAGACTACTACTAGACGCAAGGAAAAACAGAAAGAGCCAGTAAACAAAAGTGAAGTCAAGGGAAAGGGTCTCTCTCAAAAAGTTACACGTGAAGTGGAAGATTGCCCTCATCCAGCAGATGCAGATGGAAATCAAAAGTTGGACGCCGTTGTAAAAATTAATCCCAGCGACAACAGAGTATCAGTCAATCCAGACATCATGCCTGGTTTGGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGCCACAAGTGGCGGCGTATTCCAGCTGTGCTTGCAGACCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGCGGTGATAAAGCTTTTGCTGATTGTGCTATTCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGATTATCATATGCATCTGGTGAAGAAGATGTCCGAGACGAATCCAAAAATTATAAGGAATTGGAATATCGAATACCAATGGTTTCCCAAGGGTCATCTTTCACCCACATTTCCACCAATGAGTTTCTGCACCGCAATCCGAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCATGTGGGGACCATTGTTCTAATCAGCAGTTCCAAAATCGCAAGTATTCCAGACTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGAGCGGGTAGCAAAAGGCCACTTTATTATTGAATATGTTGGAGAGGTCCTTGACATGCATGCATATGAGGCGCGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTACTTTATGACCTTGAACGGAAGTGAGGTGATAGATGCAAGTGCAAAAGGAAATTTGGGGCGTTTTATTAATCATAGTTGTGATCCTAACTGTCGGACAGAAAAGTGGATGGTGAACGGGGAAATCTGTATTGGATTGTTTGCATTGCGGCATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCGCCTCATTGTCGAGGTTATATAGGCGGCGGTGATCCACTTAAAGACGAGCTTATAGTTCAAGGTGATTCAGATGATGAGTTTCCAGAACCAATGATGCTTACTGAAGATGGTGAAGTTGAGGACAGCATACCTATGCCCAAGTACTATGATAATGTTGATACAGAGTCTTCTAGGCATTTATTAACAGACATGGATGTATTGGACAAGTCTACAACTGCTATAGATGCAGATGGTTCTCCAGAGAAAGATAGTTCTATAGACCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCTGTTGATGTGGAAGACTCAAAAGGCAGTTTACCATCTTCTGATCGAGTTGAAGAAATTTCTCAACAAATGGATGATACAACAAGCAAACCCATACCAGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGGCGGAAATGGTTTTTCACAATCACATCTGCATGTGAAACTCAACGAAAGTGCTTCGGGTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAACTCCCTCACAGCTGAAGTGCAAGCCAATCGATTGCCAGTGTCATCTACCAAACACAAAAAAGTAGTCGAAGGTTCTTCCAATGCACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGAATTAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGACGCTCTTCTGAAAACAAAATCCAGAGCCGTGCTGAATGATGTGATTAGTAAAAATGGCTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTTCGAAAGCTTCTTAAGGTCTTGGAGTATCTGGCAGCAGGCAAGGTTTTGACACTGGAACATATCAAGAGCGGCCCTCCTTGCCGTGGAATGGAGAGTTTTAGGGAATCAATGCTGTCTCTGACAGAGCACGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCAAGACATGGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGAATCTCACAGAAATTTCAACTGTAATAGATTTTTCAGCATCTCATAA 4890 0.4204 MGSCGEPAIVGDPVGLSVIEQQPLNSGFPARFDSVEESCSEDPCNVLDLSGMADGFMEDGHVGCSGSFVDVTEGSGDGLRNECEIDDLLQLEMGAEDGCQNSLGVCSEDIDVSDFISDGLHSEGNFQDEGNVDLPNNLQKHCAEQGEQKDEKSVVLSLAGDDSEVVEGKNDGADLIASAVNCVLEAAHSDVSLESDFMRDWLVDCIQKNEPEGEIMRNAESLPKVVGNCDYDGLDGMEANSCWQISSSLDVEVPSGALFIDTKLESTSDKLHNQKNGVDCDSACEEKIRATVDKEITDNSRVQSSPSPDLIRTSRTSPVVDSLCQPTLPDPGSELKNDILQIEDNFCILKDCSADGTANSTIRKPFYPESGQSSSVLVTSSSPKDVPDLLSKGNSVSIKDTCAADNPGQTNNDGQEAVEVDCITESILLPSQSNSQTTEFGRNTQTRKASRKSTNKASVTHPSGGMKINLEASRKKRSCSSKPGRSSAWGLMGNIEQFFQYENELEVSEAMCQNVGKARNNCQGGKTTKNSTSSSSLSSVPKYNVSTSTTRFRLKIKYGKENDLPASASYNGPDSGSQKVISNSADKVSVVLALNSLGSFRNDPDKDCVVLNGHTVNSQLENSKITEKSEGDVEEPCHAVPPERVVEALVKPINNSATDPGTSPDSEVIDSIPEVQVGERHEDVHLDVLGSSNELNSNQDVTFQKRGKKKDKPIGSGNCITEDASHGQLGNNGAVHSKNHRHKNCNDVASSLELSTSTELSKSIKSKELAAESLPLSGETVLGGSAKALKAKSHATVKTVGKTFGGHEFSKFQGSEDLPSSTRPLGRKLPKSLEPTSKFSKAKSNGSDSTSRKKTTTRRKEKQKEPVNKSEVKGKGLSQKVTREVEDCPHPADADGNQKLDAVVKINPSDNRVSVNPDIMPGLGLGEQPQSPRNAWVSCDDCHKWRRIPAVLADRIDETNCTWTCKDSGDKAFADCAIPQEKSNAEINAELGLSYASGEEDVRDESKNYKELEYRIPMVSQGSSFTHISTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDHCSNQQFQNRKYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRHIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLKDELIVQGDSDDEFPEPMMLTEDGEVEDSIPMPKYYDNVDTESSRHLLTDMDVLDKSTTAIDADGSPEKDSSIDPASAVSLLHSSVDVEDSKGSLPSSDRVEEISQQMDDTTSKPIPAVSKVLSNSTDSRESKSEMVEGGNGFSQSHLHVKLNESASGKKAKVSANAANSLTAEVQANRLPVSSTKHKKVVEGSSNARFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDVISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAAGKVLTLEHIKSGPPCRGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRHGRKRGYMDRDDNRESHRNFNCNRFFSIS* 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1975 1629 Pfam CW-type Zinc Finger 936 982 IPR011124 GO:0008270
Psa5g1975 1629 MobiDBLite consensus disorder prediction 297 318 - -
Psa5g1975 1629 MobiDBLite consensus disorder prediction 521 542 - -
Psa5g1975 1629 Gene3D - 926 989 - -
Psa5g1975 1629 SMART PostSET_3 1221 1237 IPR003616 -
Psa5g1975 1629 ProSiteProfiles Zinc finger CW-type profile. 930 984 IPR011124 GO:0008270
Psa5g1975 1629 MobiDBLite consensus disorder prediction 1350 1372 - -
Psa5g1975 1629 ProSiteProfiles AWS domain profile. 1044 1094 IPR006560 GO:0005634|GO:0018024
Psa5g1975 1629 MobiDBLite consensus disorder prediction 692 715 - -
Psa5g1975 1629 MobiDBLite consensus disorder prediction 1327 1376 - -
Psa5g1975 1629 SUPERFAMILY SET domain 1023 1234 IPR046341 -
Psa5g1975 1629 MobiDBLite consensus disorder prediction 1335 1349 - -
Psa5g1975 1629 SMART set_7 1096 1219 IPR001214 GO:0005515
Psa5g1975 1629 MobiDBLite consensus disorder prediction 837 851 - -
Psa5g1975 1629 Pfam AWS domain 1059 1092 IPR006560 GO:0005634|GO:0018024
Psa5g1975 1629 MobiDBLite consensus disorder prediction 433 486 - -
Psa5g1975 1629 CDD SET_SETD2 1095 1237 IPR044437 GO:0010452|GO:0046975
Psa5g1975 1629 Gene3D SET domain 993 1245 IPR046341 -
Psa5g1975 1629 SMART shorttest3 1044 1095 IPR006560 GO:0005634|GO:0018024
Psa5g1975 1629 MobiDBLite consensus disorder prediction 433 462 - -
Psa5g1975 1629 Pfam SET domain 1107 1213 IPR001214 GO:0005515
Psa5g1975 1629 ProSiteProfiles Post-SET domain profile. 1221 1237 IPR003616 -
Psa5g1975 1629 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 442 1627 - -
Psa5g1975 1629 PANTHER SET DOMAIN PROTEINS 442 1627 - -
Psa5g1975 1629 MobiDBLite consensus disorder prediction 811 882 - -
Psa5g1975 1629 MobiDBLite consensus disorder prediction 852 882 - -
Psa5g1975 1629 ProSiteProfiles SET domain profile. 1096 1213 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1975 Psa-Chr5 153017357 153031022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1975 1078 1237 Su(var)3-9 homologs AT1G73100 35.052 4.21e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g1975 SET 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1975 - - mtr:MTR_3g088625 2105.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1975 5 153017357 153031022 Psa5g1975 5 153017357 153031022 ECH