Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1972 ATGCAAAAAATATCTCATAACGGCGGCGGCTCCGGTCGCCGGACGGTGGTGGTGGGAGTCAAAATGGATTCTCCCAGTAAAGAGCTTCTGACTTGGGCTTTAGTTAAAGTTGCTCAACCCGGTGATCTCGTTGTTGCTCTGCATGTTCTTGGTACCCATGAAATTATGAATGGAGATGGAAAATCGTCGTTGCTTTCTCTTGTGAAAGCGTTTGACTCTGTTCTTAATGTTTATGAAGGGTTCTGTAATCTGAAGCAGGTGGATCTTAAGCTAAAAATTTGCCGTGGAACATCGGTGAAGAAAATTTTGGTGCGAGAAGCAAATGTTTATTGTGCAACTCATGTTATTGTTGGGAGTGTTCATGGCTTCCATAGAATCCGAACTTCTAGCTCTGTAGCTAAGTACTGTGCTGGAAAGATAGCTCATGATTGTTGTGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCCGGCGCGGTAGATTGGAAGAATCAAGTGTTGTTGATGTACAAGGGTTTGATTGTCATCGCGGAGATGGTTTGCTTGGTTCGATTCGTTCGACACTCGGTAGTACTACGAAAGTATCGAATGATGATGGTGATAAGGGAACCAAACGGGTTTCGGATCATAGTTTAGGTAAGATTTTACTTGATTCTACAGAAAAAGTAAGGGATCGAAGTTGTTCGATTTGCGGGGCAATGGAAGAGAATTCATGCCATCAATGTGGAGAAGCGCCTTCGAAAGAATCCGAAGGCTCTTCTTCTCGTGATGGTGACAATGGGAATTCTTTGGCAATAGTGCCTGTACTGACCATTGATGCGGGGCAACAACCGGAATTGAAACCCGGTTGGCCGCTACTTCATCGGAAGATTTTATCAGAAAGACAATTACTTATTAAACCGTTCAAGCGCCAGCAGACCTCTGTCGTCCAGTGGGCAATGAGCTTGCCGAATAGAAATGTATCATATGGTGGTGTTGATCATGATAAACAACTTAGCATTTGTGATCAAGGTCGGGATCAACCGGCGAAGTTAAATAGTGAGAGCGGCGCTCTTGTTCCGGTAGATTCCGAAATAGGGAAAACATATTCATTGCCTGAATGCACTTTAAAAACCATTCCTAAAGAATTGGAGGGCCTTCCGGAGAAATACTCATCAACTTGTAGATTGTTCGAGTACCAAGAACTTGTATCGGCAACATCAAATTTTTTGCCTGAAAACTTGATTGGTAAAGGAGGAAGTAGTTTGGTTTATCGAGGCTGCCTTCGCGATGGCAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCTTATGATGTTTTGAAAGAGTTTCTTTTGGAAATCGAAATCATTACTACATTGCATCACAAAAACATTATTACACTCCTCGGATTCTGCTTCGAGAACGGAAAGCTTCTTCTAGTCTACGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATTCACGGTACTAAGAAAAACCCTCGCGAGTTCGGTTGGGCACAGAGATATAAGGTTGCTGCAGGTGTTGCCGAGGCTTTAGATTACCTGCATTGTAAAGATGATCATCCTGTGATTCACCGGGATGTAAAGTCCTCCAATGTATTACTATCCGAAGATTTCGAACCGCGGCTATCTGATTTTGGATTGGCTACGTGGGCATCAACCTCGTCATCATATATAACGTGCACAGATGTTGCTGGAACCTTCGGTTATATGGCTCCCGAGTACTTCATGTACGGCAAAGTAAGCGATAAGATCGACGTCTATGCATTTGGTGTCGTGCTTCTCGAGCTTCTGTCAGGGAGAAAGCCCATAAGTGTTGATTATCCAAAAGGTCAACAGAGTCTCGTCATGTGGGCAACTCCAATTCTAAATAGTGGAAAGGTGTCACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGAATGGTTTTAGCAGCCACTCTTTGCATCAAACGTGCTCCAAAAGCTAGGCCTCAAATGAGCATTGTATCAAAGCTCCTTCGAGGCGACGACGATACAATCAAGTGGGCAAAGTTAGAAGTGAATGCTTTGGAAGCGCGCGAAAAGCTCGAAGACGAAACATGTCCTCCTAGTAATCTACTAAAGTCACATCTTAATCTTGCACTACTTGATGTGGAAGATGACTCACTCTCCATGTCTAGTGTTGAGCAAAGTGTGTCATTAGAGGAATACTTGAGAGGAAGATGGAGTAGAACATCAAGTTTTGACTGA 2250 0.4316 MQKISHNGGGSGRRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTHEIMNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGTSVKKILVREANVYCATHVIVGSVHGFHRIRTSSSVAKYCAGKIAHDCCVLAVNNGKVVFRRGRLEESSVVDVQGFDCHRGDGLLGSIRSTLGSTTKVSNDDGDKGTKRVSDHSLGKILLDSTEKVRDRSCSICGAMEENSCHQCGEAPSKESEGSSSRDGDNGNSLAIVPVLTIDAGQQPELKPGWPLLHRKILSERQLLIKPFKRQQTSVVQWAMSLPNRNVSYGGVDHDKQLSICDQGRDQPAKLNSESGALVPVDSEIGKTYSLPECTLKTIPKELEGLPEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSLVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGKLLLVYDFLSRGSLEENIHGTKKNPREFGWAQRYKVAAGVAEALDYLHCKDDHPVIHRDVKSSNVLLSEDFEPRLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISVDYPKGQQSLVMWATPILNSGKVSQLLDPSLGDNYDHEEMERMVLAATLCIKRAPKARPQMSIVSKLLRGDDDTIKWAKLEVNALEAREKLEDETCPPSNLLKSHLNLALLDVEDDSLSMSSVEQSVSLEEYLRGRWSRTSSFD* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1972 749 CDD STKc_IRAK 408 673 - -
Psa5g1972 749 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Psa5g1972 749 SUPERFAMILY Protein kinase-like (PK-like) 383 672 IPR011009 -
Psa5g1972 749 Pfam Universal stress protein family 13 144 IPR006016 -
Psa5g1972 749 Gene3D Transferase(Phosphotransferase) domain 1 477 690 - -
Psa5g1972 749 ProSiteProfiles Protein kinase domain profile. 402 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1972 749 Gene3D Phosphorylase Kinase; domain 1 372 476 - -
Psa5g1972 749 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 149 - -
Psa5g1972 749 Pfam Protein kinase domain 406 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1972 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Psa5g1972 749 Gene3D HUPs 13 151 IPR014729 -
Psa5g1972 749 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 8 743 - -
Psa5g1972 749 SMART serkin_6 402 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1972 749 PANTHER OS01G0253100 PROTEIN 8 743 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1972 Psa-Chr5 152931992 152935918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1972 389 669 Trihelix Transcription Factor Family AT1G68690 46.690 1.35e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa5g1972 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1972 - - aprc:113846853 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1972 5 152931992 152935918 Psa5g1972 5 152931992 152935918 ECH