Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1968 ATGCCACCGCGTCGCTGCACAGTTTACGCCGATAGCGATTACGACGACGATGACGACGATAATCTCACCGCCACGATCACGAGGTGTCTCTCTTGCGACGAGAATTACGACCCCGATGAAGCCGGCACCTGCAAAGAATGCTACGAAGAAGCCAACGAAACCGAGGAAGAACTCAAACGGCAGATCCAAGACCTTAAATCCAAAGTCTCCTTCCTCACTCTCTCTTCTCCGCTCGATTCTCCTTCTACAACCGATCTCGTTCTCCTTCCCTCCGCTGATGCTTTCTCTCCTTCCATTCCGGCTCACAAGGCCGTTCTCGTTAGTCGCTCTCCAGTCTTCAGAGCCATGCTTGAGCACGATATGGATGAAAGTCGGAGTGGCACCATCAAGATTGCAGATGTATCATACGACGCCCTTCGTGCTTTTGTTAACTACTTATACACTGCCGAAGCATTCCTTGACAACCAAATGGCCTGTAATCTTTTAGTTTTAGCTGAAAAGTATCAGGTGAAGCATCTTAAGGCATATTGTGAGAAGTATTTGATCTCCAAACTGAATTGGGAGAAAGCTGTTGTGAACTTTGCTTTTGCACATCAACACAATGCCAACCAATTGCAAGATGCAGCCTTGATAGTGATCATGGAGAACATGGACAACCTCACTAAAAATGAAGATTATATAGAGTTAGTGGACAGTAATCCTCGTCTTGTTGTGGAAATATATGAAGCATATCTTGGCAAACAGGTTAATACTGCAGCCTCGCATGGGCTATAG 774 0.4625 MPPRRCTVYADSDYDDDDDDNLTATITRCLSCDENYDPDEAGTCKECYEEANETEEELKRQIQDLKSKVSFLTLSSPLDSPSTTDLVLLPSADAFSPSIPAHKAVLVSRSPVFRAMLEHDMDESRSGTIKIADVSYDALRAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAVVNFAFAHQHNANQLQDAALIVIMENMDNLTKNEDYIELVDSNPRLVVEIYEAYLGKQVNTAASHGL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1968 257 SUPERFAMILY POZ domain 78 183 IPR011333 -
Psa5g1968 257 Gene3D Potassium Channel Kv1.1; Chain A 51 185 IPR011333 -
Psa5g1968 257 PANTHER GH01369P 23 254 - -
Psa5g1968 257 Pfam BTB/POZ domain 78 184 IPR000210 GO:0005515
Psa5g1968 257 CDD BTB_POZ_ZBTB_KLHL-like 98 168 - -
Psa5g1968 257 Coils Coil 44 75 - -
Psa5g1968 257 PANTHER SPECKLE-TYPE POZ PROTEIN 23 254 - -
Psa5g1968 257 ProSiteProfiles BTB domain profile. 84 155 IPR000210 GO:0005515
Psa5g1968 257 SMART BTB_4 84 185 IPR000210 GO:0005515
Psa5g1968 257 Gene3D - 186 255 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa5g1968 BTB 1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1968 K10523 - gmx:100794118 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1968 5 152831876 152834850 Psa5g1968 5 152831876 152834850 ECH