Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1967 ATGAATACTGAGGAAAGAATGAGAAATCCTGATGACACTGAATGTACTGAAGGAGTTCAGAGTTTGAAATGCGAAGTTGTTTTTGATGAGGTGCTAATTTCCAATGGAGGTGGTGTTGCTGGAGAGGCTCGGCATTTGAAAAGTGAAGCCGTGAATGGTGATTGTTGTTGTGATATGAGAGCTGAGGAAGGAATAAAAAGTCCTGGTAACAGTGAACGTGCTGAAGGGGTTCAGTGTTTGAAACGCAAAGTCATTTCTGATGAGGTGCCGATTTCCAATGGGAATGTTGTTAGTGAACAGGCTCGACACTTGAATAGCGAAGCCTTGAATGATGACTGCTGTTTTGATATGGGAAATGAGGAAGGAATGAGCAGTCCAGGGGACACTAAAGGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCATTTCTGATGAGGTGCCAATTTCCAATGGGAATGGTGTTACCAAAGAGGCTCGACACTTGAAAAGTGAAGCCATGAATGATGGGGTGGTATTTGCCATTGGAAATGGTGTTGCTGATGTGGCTGGGGTTTTGAGAAGTGAAGTGTCGAATAATGGGGTAACTGGAAATGGTGTATTTGAAGAGGATCGACACTTGAAAAGTGAAGCCATGGGCGATGGGGTGGTATTTGGCTATGGAAATGGTGTTACTGATGTGGCTGGGGTTTTGAAAAGTGAAATGTCGATTAATGGGATAAATGGAAATGTTGTATTTGAAGAGGATCAACACTCGAAAAGTGAAGCCATGAATGATGGGGTGGTATTTGCCAATGGAAATGGTATTACTGATGTGGCTGGGGATTTGAAAAGTGAAGTATCAAATAGTGGGGTGAATGAGAATGGTGTTATTGAAGAGGGCGGTGTTTTGGAAAGTGAACGCATTAGCAATGAGGTGCCAATTGCAGATGGGTTTGATTCTGGCGACAGGGGCTCTGGTGGACTTACATGTCTTCGAACTTATAAGAGGCGAAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTCAGGTGGATTGCAGAAAGTATGTGGAAACTGCAAGTCATGTAGCAGACCAGGCTGTGAAGGAACCCTTTGATGCAACTTTCGGCAATACTGCAAATGATTGTGCCCATAGACATCGGGGGAATGATGTACTAAAGCATTTATATCAGTCATTAGGAAATGTTGATGGTGGCATAGAGGGGTGCATAGGGCAAGCACTAATTCACCATCCTCAAAGAAGTTGTGCCACAACTGTTATGCAGGGAACTTCTAAAATTGACAAAGATGGACATGAATTCTCTTCACACTTTGACCGCCTATCTCATAGACCACAGACTGAAGCTAATGGTCATGCACATGTCATGCAAAGTGGATCTTCTAGTGAACCCCATGGCCATGGTGTGACTGAGATGTGTCAACGCGTGCTCCACAATATATTAACCTCAGAAGAATTCAATTCATTACGCAAGACTTTACTTGAAAATTTCCAAGGAATAAAGCTTGAAAGTGTATTTGATTTTAGTGTCACGAGCTCAAGGATGAAGCAGAAAACTTATGAACAATCACCTACACTTTTCTTGTCAGATATTCAACAGGTCTGGAGTAAGCTTCAAGATGTTTGTAACGGGGTTTCTGCTCTTTCTAAGAGCCTCTCCAACATGTCAACAACTTCCTACTCTGAGCTGGTTGGAATTTCAGCGCAGAGCACATTTGAAGATGAAAAACAAGTGGAATCGGACTCGCACGTGAAACCGGAGCAGACGGAAGAGTGCACTACCTATAAAATTTGCTGTTGCAATTGCTGTGGAGAAAGGGCAGATGGCACAGACTGTTTGGTGTGCGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCCCGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACTAGTGGCTTTGGATCTCCCCATGAGAATTGTGTAGTATGTACGAGGTTGAATCATGCAATGACTCCGAAGAAAATAGTTGGTGATGAAAGCCTCACTACAAATGAGGAAACACTTAATGAATTTGAAGAGAATTCACATTGCAGCTATGATGAGGTTAAAGTATCTAAAGGCGAGAAAAAAACACGGGATTGCAAAGTGTGTGGAAATGAAGTCATAGATGGTGAAAAAATTAGAATATGTGGTCACCCGTTTTGCCCAAGTAGTTACTACTACCATGTAAGGTGCTTGACAAGCAAGCAATTAAATTCATATGGTAGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCATCGATCAAAACGACGACCAAATTGTCCTCTGTGATGGCTGTGATCATGCATATCACATGTATTGCATGAAACCTCCTCTAGATTCTATTCCAAAAGGGAAATGGTTCTGCAAAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAATAACAAGCTGAGAGCTGGTGAAAATGTTTCAAAGCCAAAAGCTAATAATGAAGTCAATTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGGTGGAGGAATGGACATGCTTTTAACTGCTGCCAATTCTCTGAATTTCGAAGATAATTTGACCAAAAACCAGTTTGAGTAG 2634 0.4199 MNTEERMRNPDDTECTEGVQSLKCEVVFDEVLISNGGGVAGEARHLKSEAVNGDCCCDMRAEEGIKSPGNSERAEGVQCLKRKVISDEVPISNGNVVSEQARHLNSEALNDDCCFDMGNEEGMSSPGDTKGAEGIRCLKRKAISDEVPISNGNGVTKEARHLKSEAMNDGVVFAIGNGVADVAGVLRSEVSNNGVTGNGVFEEDRHLKSEAMGDGVVFGYGNGVTDVAGVLKSEMSINGINGNVVFEEDQHSKSEAMNDGVVFANGNGITDVAGDLKSEVSNSGVNENGVIEEGGVLESERISNEVPIADGFDSGDRGSGGLTCLRTYKRRKYDKSSSKGKAQVDCRKYVETASHVADQAVKEPFDATFGNTANDCAHRHRGNDVLKHLYQSLGNVDGGIEGCIGQALIHHPQRSCATTVMQGTSKIDKDGHEFSSHFDRLSHRPQTEANGHAHVMQSGSSSEPHGHGVTEMCQRVLHNILTSEEFNSLRKTLLENFQGIKLESVFDFSVTSSRMKQKTYEQSPTLFLSDIQQVWSKLQDVCNGVSALSKSLSNMSTTSYSELVGISAQSTFEDEKQVESDSHVKPEQTEECTTYKICCCNCCGERADGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCANCTTSGFGSPHENCVVCTRLNHAMTPKKIVGDESLTTNEETLNEFEENSHCSYDEVKVSKGEKKTRDCKVCGNEVIDGEKIRICGHPFCPSSYYYHVRCLTSKQLNSYGSWWYCPSCLCQVCLIDQNDDQIVLCDGCDHAYHMYCMKPPLDSIPKGKWFCKKCDAGIKAISQAKKAYENNKLRAGENVSKPKANNEVNCNNKCVEELESGGGMDMLLTAANSLNFEDNLTKNQFE* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1967 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 807 IPR013083 -
Psa5g1967 877 ProSiteProfiles Zinc finger PHD-type profile. 596 647 IPR019787 -
Psa5g1967 877 PANTHER HISTONE ACETYLTRANSFERASE 386 868 - -
Psa5g1967 877 ProSitePatterns Zinc finger PHD-type signature. 756 805 IPR019786 -
Psa5g1967 877 ProSiteProfiles Zinc finger PHD-type profile. 758 808 IPR019787 -
Psa5g1967 877 Pfam PHD-finger 761 806 IPR019787 -
Psa5g1967 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 764 IPR013083 -
Psa5g1967 877 CDD PHD1_Lid2p_like 761 805 - -
Psa5g1967 877 SUPERFAMILY FYVE/PHD zinc finger 590 645 IPR011011 -
Psa5g1967 877 PANTHER D4, ISOFORM A 386 868 - -
Psa5g1967 877 SUPERFAMILY FYVE/PHD zinc finger 760 810 IPR011011 -
Psa5g1967 877 SMART PHD_3 599 645 IPR001965 -
Psa5g1967 877 SMART PHD_3 761 806 IPR001965 -
Psa5g1967 877 SMART PHD_3 709 760 IPR001965 -
Psa5g1967 877 Gene3D - 492 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1967 Psa-Chr5 152815671 152824856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1967 760 827 C2H2 Transcription Factor Family AT3G01460 41.176 4.03e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g1967 PHD 2.2e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1967 - - gmx:100795906 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1967 5 152815671 152824856 Psa5g1967 5 152815671 152824856 ECH