Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1965 ATGGCTTTGCAGTACTCAAAACAGCTGCTGCTGATGGTGGTTGTTGCTGTCTTTCATACAAAAGCAAAAGCGGCAACTCAACCACCAAATTGTCCAACAAAGTGTGGCTCGGTCACCATTCCTTTTCCATTTGGAACCACCAAGGATTGTTCCCTAGACAACACTTTTCTCATCAACTGTAACGAAACATCTTCAACTACATCAAACTCAACAACACTGATACCTTTTTTGCCAAACACTAATCAAAGTGTCTTAAATATTTCACTCGAAAACGGTACACTGCGTGTTGCATGGCCAGTAGCCAGCGATTGCTACACTGAAAAGGGTACACTCATGAACCAAAAACTTCAGGACATCAACATGACTTATTTTCCTCTCTCGCCAACTCGAAATAAGTTGATAGCAGTTGGCTGTGACACAGTTGGAGTATTCTTCGCAACGGGTTCTGATGGAGAAACATACACCAGTGGATGTGTGGCTTTGTGTAACAGGCGTGATGATATTGTGGTCAATGAATCTTGTTCTGGCACTGGCTGTTGCGAAGTTTCAATACCCCACGGTCATGTGTTAACGGAAGTAGTCTATGCATCTCGTAGCATATTCAAGAACCACTTGGTAGTACATAACTTCAATCCATGTGGTTATGCGTTTTTGGTTGAAGATGGAAACTACAGGTTGGCATACAAAGACCTCGTCGAGTTGGAGATGGAGTTCCCAGTGTTGTTGGATTGGGCAATAGGGAACAAAACGTGCGAGCAAGCAAAGAAGGATATTTCAAGTTATGCATGTAAGGCTGACAAAAGTACATGTCACCAGGCAGCAACCAAAAAATTGGGTTACCTTTGCAAATGCCTTGATGGATATCGGGGAAATCCTTACCTCAATCATGGTTGCCAAGATATCGATGAATGCGAGGAATCCAATGACTGCGTTAACAGAACATGTGTCAATCGTCCTGGAAGCTACTATTGTAAATGCCCGACAGGATATGAGGGAGACGGAAAACGTAATGGAACGAGATGCAGTCTCAAATCAAGAAAAGAGCACATGTTGATCATTGCATTGAGTGTTAGTGTAAGCGTGGTAGGACTACTGATGGGAAGCATTTACGCATATTGGGCATTGAAGAAAATAAAGCTCATTAAACTTAAAGAGCAGTTTTTTCAACAAAACGGCGGCTTACTCTTACAACAACAGCTAGTGAAAAATGTGGTAAAACTCTTGGGTTGTTGCTTAGAGACAGAAGTCCCCTTGCTTGTTTATGAATTCATTCCCAATGGTACATTATACGAGCATCTTCATGATCTAAACCAATCGATAAAGCTTAGCTGGAAAACAAGACTGCGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATATTTGCATTCTGCTGCTTCTACACCAATCATACATCGAGATGTGAAATCTACAAATATACTTCTAGATGACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCGAGGATGGTTCCTCTTGATAAAACTCAGATAACCACTCTAGTGCAGGGGACAATGGGGTATCTTGACCCAGAATACTTCCAAACAAGCCAGTTAACAGAGAAGAGTGATGTATATAGCTTCGGGGTTGTGTTAGCAGAGCTACTGACAGGAAAGAAAGCACTGTGTTTTGGCAGGCCAGAGGTAGGTAGAAACCTTGCATTGTACTTTGTTTCTTCAATGAAAGAAGGTCAGTTATTTCATATTCTGGACAAAAATATTGATGAGCCAAATGTGGAGCATCTTAAGGAAGTTGCTCTAATTACAGAAAGGTGTTTAAGGGTGAAGAGTGAGGAAAGACCGACCATGAAAGAAGTGGCAATGGGACTTGAAGGAATATTAGTTATTGAAGAGCAGCAGAATTGGGGAAGTGACAAATTGCCTTCAGAAGTGACTGAAAACAAGCTCAACGCAGCACCGTCTGTTATCAATGTTGAACACGGTGTTGGCGGAAGTGGCATTAACTCTTCGGACTCATATAGCATAAACCAGATTTCGATGTCGGGGATTGGTGGAAGATAG 2043 0.42 MALQYSKQLLLMVVVAVFHTKAKAATQPPNCPTKCGSVTIPFPFGTTKDCSLDNTFLINCNETSSTTSNSTTLIPFLPNTNQSVLNISLENGTLRVAWPVASDCYTEKGTLMNQKLQDINMTYFPLSPTRNKLIAVGCDTVGVFFATGSDGETYTSGCVALCNRRDDIVVNESCSGTGCCEVSIPHGHVLTEVVYASRSIFKNHLVVHNFNPCGYAFLVEDGNYRLAYKDLVELEMEFPVLLDWAIGNKTCEQAKKDISSYACKADKSTCHQAATKKLGYLCKCLDGYRGNPYLNHGCQDIDECEESNDCVNRTCVNRPGSYYCKCPTGYEGDGKRNGTRCSLKSRKEHMLIIALSVSVSVVGLLMGSIYAYWALKKIKLIKLKEQFFQQNGGLLLQQQLVKNVVKLLGCCLETEVPLLVYEFIPNGTLYEHLHDLNQSIKLSWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDDNLTAKVSDFGASRMVPLDKTQITTLVQGTMGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGKKALCFGRPEVGRNLALYFVSSMKEGQLFHILDKNIDEPNVEHLKEVALITERCLRVKSEERPTMKEVAMGLEGILVIEEQQNWGSDKLPSEVTENKLNAAPSVINVEHGVGGSGINSSDSYSINQISMSGIGGR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1965 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 402 644 - -
Psa5g1965 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 400 - -
Psa5g1965 680 Gene3D Phosphorylase Kinase; domain 1 366 427 - -
Psa5g1965 680 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Psa5g1965 680 CDD EGF_CA 300 333 - -
Psa5g1965 680 Gene3D Laminin 261 336 - -
Psa5g1965 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 400 IPR045274 GO:0007166
Psa5g1965 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 402 644 IPR045274 GO:0007166
Psa5g1965 680 Pfam Protein tyrosine and serine/threonine kinase 395 614 IPR001245 GO:0004672|GO:0006468
Psa5g1965 680 ProSitePatterns Calcium-binding EGF-like domain signature. 300 324 IPR018097 GO:0005509
Psa5g1965 680 Gene3D Transferase(Phosphotransferase) domain 1 428 639 - -
Psa5g1965 680 ProSiteProfiles Protein kinase domain profile. 351 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1965 680 SUPERFAMILY EGF/Laminin 298 335 - -
Psa5g1965 680 Pfam Wall-associated receptor kinase galacturonan-binding 31 97 IPR025287 GO:0030247
Psa5g1965 680 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1965 680 Pfam Calcium-binding EGF domain 300 341 IPR001881 GO:0005509
Psa5g1965 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Psa5g1965 680 SUPERFAMILY Protein kinase-like (PK-like) 372 622 IPR011009 -
Psa5g1965 680 SMART egf_5 250 299 IPR000742 -
Psa5g1965 680 SMART egf_5 303 342 IPR000742 -
Psa5g1965 680 ProSiteProfiles EGF-like domain profile. 300 342 IPR000742 -
Psa5g1965 680 SMART egfca_6 300 342 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1965 Psa-Chr5 151991144 151998760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1965 374 637 Receptor kinase-like Gene Family AT1G21240 57.303 3.78e-97 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa5g1965 PK_Tyr_Ser-Thr 5.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1965 - - mtr:MTR_3g088780 493.812