Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1964 ATGGCTCAATTCTTCTCACACAAACCAAATATGTATCCTCAGTGGAATGAGAATTCTCAAAGGCATCATCAACAACATAGAGGTTCAGCCGAAACAGCTAAAGTCCTAACTCTGGATGGGCTAAAGGAAGCTACCAACAATTTTGATGACAAGATCCTAGGCCAAGGTGGTCAAGGAACGGTTTACAGAGGAGTTTTACAAGTTAAAAGAACTGTAGCAATAAAAAGGTCCAAAGTGAGTGATCCAAATCAGGTTGAACAGTTCATCAGTGAAGTGATTGTTCTATCTCAAATCAACCATAGGAATGTGGTACAACTCTTAAGCTGTTGTTTAGAGACAGAATTTCCATTGCTTGTTTATGAATTCATTTCGAACGGTACTAATTTTGAGCATCTTCGTGATCAAAATAAATCTTTAGAACTTGGATTTAAAACAAGGTTGAGAATAGCAACACAAACTGTTGGAGCTTTGGCTTACTTGTATTCTGCTGCTTCTACACCAATCATACATAGAGATGTGAAAACTTCAAATATACTTCTTTATCATAATCGCACTGCAAAGGTTTCTGATTTCGGCGCTTCTAGGATTGTTCCTCTTGATCAAAGTCAGATAACAACTTTGGTGAAAGGGACACTAGGGCCAGAGGATGATAGAAGCCTTGGAGTTTACTTTGTTTCGTCGATGAAAGACGGTCGGTTACTTCATATTGTGGAGAGACAGATAATAAATGAGGCAAATGTTGCGCAAATAAAGGAAGTTGCTAACATTTCAGAAAGGTGTTTAAGGTGGAAGAGAGAAGATAAACCTACCATGAAAGAAGCGGCAATGGAACTAGAAGGAATGTTAGTTATGGAAGAGCATAGAGGGGAAATTCAAATTTGTCATTAG 888 0.3818 MAQFFSHKPNMYPQWNENSQRHHQQHRGSAETAKVLTLDGLKEATNNFDDKILGQGGQGTVYRGVLQVKRTVAIKRSKVSDPNQVEQFISEVIVLSQINHRNVVQLLSCCLETEFPLLVYEFISNGTNFEHLRDQNKSLELGFKTRLRIATQTVGALAYLYSAASTPIIHRDVKTSNILLYHNRTAKVSDFGASRIVPLDQSQITTLVKGTLGPEDDRSLGVYFVSSMKDGRLLHIVERQIINEANVAQIKEVANISERCLRWKREDKPTMKEAAMELEGMLVMEEHRGEIQICH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1964 295 ProSiteProfiles Protein kinase domain profile. 47 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1964 295 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 215 287 - -
Psa5g1964 295 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 29 213 - -
Psa5g1964 295 Gene3D Transferase(Phosphotransferase) domain 1 215 292 - -
Psa5g1964 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Psa5g1964 295 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 213 IPR045274 GO:0007166
Psa5g1964 295 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 215 287 IPR045274 GO:0007166
Psa5g1964 295 Gene3D Phosphorylase Kinase; domain 1 11 122 - -
Psa5g1964 295 Gene3D Transferase(Phosphotransferase) domain 1 123 214 - -
Psa5g1964 295 Pfam Protein kinase domain 50 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1964 295 SUPERFAMILY Protein kinase-like (PK-like) 34 284 IPR011009 -
Psa5g1964 295 SMART serkin_6 47 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1964 Psa-Chr5 151911259 151913675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1964 33 283 Receptor kinase-like Gene Family AT1G21230 50.515 2.29e-89 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa5g1964 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1964 - - gmx:100798027 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1964 5 151911259 151913675 Psa5g1964 5 151911259 151913675 ECH