Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1949 ATGGGCAGTCCTTCTTCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCACGAGATCAAGATTGTTATCGATCATGTTCGTGCCAGGGATATCATGCTCTCTTCTGGTGACAGGTTGCTTGTGCTCTGCATCTTGCATAAGGTGTCTCATCCCATGGGATACCAGACATTAGCATCTCCCGAGTCTTTTGCTGGCACAAACTTTCGAGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGCAAATGAGCTTTTATCAACTCTAGATGATTTTGAAGTCCAAGGGGTTACCATCGATATTCAAGTCACCGCAGGTTTTCCAATTAGACAGGTTATTTTTCAAGAGATTAAGAATTATAATGCATCTTGGATTGTACTTGATAGACACCTTCGGCGCGACATGAGATTCCATCTTAACAAGATACCATGTAAGGTAGCATTGGTTAAAGATGACTTGTCTGTGGATATATGGAGATCTCACAATGCACATGACACAAATATCACAGCAACAAAGCCTGTCTTTTCTTTGTCCAAGTTTGTGTCATTATCAGATTGCCATAGCATGCAAGAAATTGAGCAGTCGATTATCTCTTGCAAAAGTTATCCACATTCCTTAGCTTCTTCTGATAGCTCTGGTACTATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCATCAAAACATGAAAGATCAGGTACAACCATCAAAGGAGAATATAGACATCTCATAACATCTCAGATTGGTCAAAAGCAAAACCAATGTAGCTTTCTACCAAAATCTTCAGATGCACCAATCCTATGCACTGGCTGTGGAATAAGGACAGAGTTATCTATCAAAGAGTCAAATAGGTTTAGCTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGCCATGTATATAAGGGTGTGCTTAAAGACGGACAACAGATTGCTGCAAAAGTAAGGAAAGATGAAAGCACACAAGGTTTTTCTGAATTTCATTCAGAGGTTTACGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGTTACTGCTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAATCTCTTCATTGGCATTTATTCGAAAACAATGACGCGGTTCTTGATTGGCCTCAAAGATATGAATGCAGAGGTGGTCCTATTATACACAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTAGGTGATTTTGGCCTTGCGAAATGGATTACAGATGGTGATCCTCTTCAAACAAAGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAAGACGGTATAGTTTCTGAAGGGACAGACGTATATTCTTATGGTGTTACTTTGTTACAATTGATATCAGGACGTCAAGTGGGGAATTTCAATAATCCAGATCAACAACAACAATCTCTTCGACAATGGGTAATATATAAATATGAATTTAATATTACACTTCGAGTGTGTAACAATTAA 1581 0.3814 MGSPSSSCIIVACDATRDRNEHEIKIVIDHVRARDIMLSSGDRLLVLCILHKVSHPMGYQTLASPESFAGTNFRAMEEEVRKKVHVYANELLSTLDDFEVQGVTIDIQVTAGFPIRQVIFQEIKNYNASWIVLDRHLRRDMRFHLNKIPCKVALVKDDLSVDIWRSHNAHDTNITATKPVFSLSKFVSLSDCHSMQEIEQSIISCKSYPHSLASSDSSGTIKSYSMHSYANSSLHSGSSSKHERSGTTIKGEYRHLITSQIGQKQNQCSFLPKSSDAPILCTGCGIRTELSIKESNRFSYSEIQLATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKDESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENNDAVLDWPQRYECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWITDGDPLQTKIMGTLGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNFNNPDQQQQSLRQWVIYKYEFNITLRVCNN* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1949 526 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 158 - -
Psa5g1949 526 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
Psa5g1949 526 Pfam Protein kinase domain 311 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1949 526 Gene3D HUPs 4 156 IPR014729 -
Psa5g1949 526 PANTHER OS01G0253100 PROTEIN 8 512 IPR045271 GO:0004714|GO:0006468
Psa5g1949 526 SUPERFAMILY Protein kinase-like (PK-like) 295 516 IPR011009 -
Psa5g1949 526 ProSitePatterns Tyrosine protein kinases specific active-site signature. 416 428 IPR008266 GO:0004672|GO:0006468
Psa5g1949 526 ProSiteProfiles Protein kinase domain profile. 310 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1949 526 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Psa5g1949 526 PANTHER RECEPTOR-LIKE KINASE 8 512 - -
Psa5g1949 526 Gene3D Transferase(Phosphotransferase) domain 1 387 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1949 Psa-Chr5 151453631 151456613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1949 241 514 Trihelix Transcription Factor Family AT1G26150 39.189 5.25e-60 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Psa5g1949 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1949 - - vun:114163670 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1949 5 151453631 151456613 Psa5g1949 5 151453631 151456613 ECH