Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1947 ATGAATAGAGATATACAACAATTCGCAATATCATCTTCATCACATTTTCAACGTTTTCCAAAATCATTCTCTCTCCGTAAAAAAGTTCCATGGTGGTACCAAATACAACATCCACGTTCACCATTTCTTGCAAAATGGAACGTAATCTTCCTCTACTCCTGCCTCTTTGCTCTCTTTCTAGACCCTCTTTATTTCTATATTCCCGTCACAGGAGACAAAGCATGCTTGCAAACAGATTTAGTCCTCGGCGTTTTCGTCACGTTATTGCGTATCGTTGCCGATCTCTTCTTCTTCTTTCATATCATTCTTAAGTTTCGCACCGCTTTTAATTCCCCTACCTCTCATGTATATGGCCGCAAAGAGCTTATCACCGATCCCGGGATGATTACCCGTCGATACCTCAGGCATGATTTCGTCATTGATCTTCTTGCCTGCCTTCCTTTGCCTCAGATAGTTATTTGGATTGTGATTCCGGCCACAAAAAACTCGACCGCAGCTCATTCAAACCACACTCTGTCCCTGATAGTTCTAATTCAGTACATTCCAAGACTGTTTCAGATTTTTCCTTTACAACGCAGAATCTTGAAGACTAGTGGGCTTATAGCAAAAACTGCTATGGCAGGTGCATTGTACAATCTCGGTTTCTACATGCTCGCCAGCCATGTTTTAGGAGCAACGTGGTATGTGACGTCGATTCAGAGACAATACGAGTGTTGGAGAATAATGTGCAAGAAGGAAATGAACAGAACACATTCACCTTCTTGTAATCCTTCTTTTCTTGATTGTAGTACTCTTGACACCCGCGAGCGACAAGTTTGGTTTAGACGCACTCGTGTACTCTCTGCTTGCGATGCACTCAATGATAGAAACCACTTTCAGTTCGGAATGTTTGCTGATGCTTTTACTGATCATGTCTCTTCCTCAAGATTCTTTCAAAAATATTTTTATTGCCTCTGGTGGGGTTTGAAAAATCTCAGCTCATACGGACAAAATCTTCAGACTAGTACTTACAGCGGCGAAACGTTATTTTCAAGTTTCATATGCATAGCAGGCCTTATTCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCCTCAACTGCGAGACTTGAAGAGTGGAGACTTAAACAAAAAGATACAGAAGAATGGATGAATCATCGCCAACTTCCAGTAGAACTACAACAACGTGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCCACGAGAGGTGTTGACGAAGAAGCCATTTTGAAATCCTTGCCTATTGATCTTCGACGCCAGATTCAGAGGCATCTCTGTCTTGATATTGTTCGCCGAGTACCGTTTTTTGGCCAAATGGACGATCAACTTCTCGATGCTATATGCGAACGTCTAGTTTCATCGTTGAACACGAAAGATTCATATATAGCTAGAGAAGGCGATCCAGTTCGAGAGATGCTTTTTATCATCAGAGGAAGTATAGAGAGTTCTACAACAGATGGTGGTAGATCAGGATTCTTCAATTCCATCACCCTAAAACCAGGTGACTTTTGTGGCGAAGAATTGCTAACATGGGCTTTAACGCCCGATCCTAGTCTTAACCTTCCAGATTCCACAAGAACGGTTAAGACATTAACCGAAGTAGAAGCATTTGCACTTCGAGCAGACGATCTCAAATTCGTATCAAGCCAATTTAAGCGTCTGCACAGCAAGAAACTGCAACACGCTTTCAGATACTATTCGCATCAGTGGAGAGCTTGGGGTGCGTCGTTTATACAAGCAGCTTGGAGGCGTCACCGGAAGAGAGAATTGGCGATGGAGTTGTTAGAAAAAGAGAATCTTTATTATGAAAGTGTTATGGAGCTAGAGGGTGATGAAGGTAGTGGTGCAGGAGAGAGTTCCAATGCTAATCATGGACAGAATTTCGGGGCTACATTTTTGGCTTCGAGATTCGCTGCAAACACGAAGAAAGGCGCGGTTAAAAAGGTTACAATAAACCCTGATGATAGCAGTTTGAAAATGCCTAAGATGTTCAAGCCAACTGAGCCTGATTTCTCAACATTTCAAGAAGATTAA 2064 0.421 MNRDIQQFAISSSSHFQRFPKSFSLRKKVPWWYQIQHPRSPFLAKWNVIFLYSCLFALFLDPLYFYIPVTGDKACLQTDLVLGVFVTLLRIVADLFFFFHIILKFRTAFNSPTSHVYGRKELITDPGMITRRYLRHDFVIDLLACLPLPQIVIWIVIPATKNSTAAHSNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTAMAGALYNLGFYMLASHVLGATWYVTSIQRQYECWRIMCKKEMNRTHSPSCNPSFLDCSTLDTRERQVWFRRTRVLSACDALNDRNHFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPVELQQRVRRFVQYKWLATRGVDEEAILKSLPIDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIAREGDPVREMLFIIRGSIESSTTDGGRSGFFNSITLKPGDFCGEELLTWALTPDPSLNLPDSTRTVKTLTEVEAFALRADDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRELAMELLEKENLYYESVMELEGDEGSGAGESSNANHGQNFGATFLASRFAANTKKGAVKKVTINPDDSSLKMPKMFKPTEPDFSTFQED* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1947 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 684 - -
Psa5g1947 687 SUPERFAMILY Voltage-gated potassium channels 38 367 - -
Psa5g1947 687 MobiDBLite consensus disorder prediction 667 687 - -
Psa5g1947 687 Gene3D Helix hairpin bin 371 436 - -
Psa5g1947 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 7 684 - -
Psa5g1947 687 SMART cnmp_10 445 573 IPR000595 -
Psa5g1947 687 Pfam Ion transport protein 46 372 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g1947 687 Gene3D - 48 368 - -
Psa5g1947 687 Pfam Cyclic nucleotide-binding domain 468 555 IPR000595 -
Psa5g1947 687 ProSiteProfiles cAMP/cGMP binding motif profile. 445 556 IPR000595 -
Psa5g1947 687 Gene3D Jelly Rolls 443 563 IPR014710 -
Psa5g1947 687 SUPERFAMILY cAMP-binding domain-like 374 570 IPR018490 -
Psa5g1947 687 CDD CAP_ED 445 576 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1947 Psa-Chr5 151327444 151330490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1947 12 681 Ion Channels AT3G48010 63.989 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1947 K05391 - gmx:100783672 1191.79