Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1921 ATGTCAAACAATGCATTAAATTTTCTTGTCTTGTTTTTTACTATCTCTTTGTTTCCATTTGTTTCTTCTCTTAACCAAGAAGGTCTCTCTTTACTTTCATGGCTTTCGACTTTCAATTCTTCGAACTTGGAAACTAGTACTACTGCTTTCTCATCATGGGATCCAGCTCACAAAACTCCTTGCAGATGGGACTATATAAAATGTTCTGCAGAAGAGTTTGTTGAAGAGATTGTAATAACATCGATCGATCTTCGTAGCGGATTCCCTATACAGATTCTTTCTTTTAACCACCTGAAAACTCTTGTCATCTCAAATGGAAATCTCACAGGTGAGATTCCAAGTTCGGTTGGAAACTTGTCATCGACACTAGTTACTCTTGATCTTAGTTTCAATAGTTTAACAGGAAAAATACCTGAAGAAATAGGAAAGTTATCTGAACTGAGATGGCTATCTTTGAATTCGAATTCGTTACGTGGTGGAATTCCAACCTCGATTGGTAACTGTTCAAGGCTTCAGCACTTAGAACTGTTTGACAACCAGCTTTCTGGTATGATTCCTGGAGAAATAGGACAGTTGAAGGCTCTTATGTCGCTACGAGTGGGTGGAAATCAAGGTATTTTCGGAGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTAGTTTTTCTTGGACTTGCAGTTACTGGAATTTCCGGCGAGATTCCGGCAAGTATAGGAGAACTTCAAAATCTCAAGACACTTTCAGTCTACACAGCACACCTCACAGGTCAAATTCCACCAGAGATTCAAAACTGTTCAGCTTTGGAAGATTTGTTTCTGTATGAAAATCAGCTTTCTGGAAAAATTCCTTATGAATTAGGTTCCATGCAAAGCCTTAAGAGGGTATTGCTGTGGAAGAACAATTTAACTGGAACAATTCCAGAAAGTCTCGGAAACTGTACAAATCTGAAGGTTATTGATTTCTCTTTGAATTCTCTTATCGGTCAGTTACCTTCGACTCTCGGTAATCTACTCTCATTGGAGGAATTTCTTTTGTCTGATAATAACATTTACGGCGAAATACCTTCATATGTTGGCAATTTTTCCATGTTGAAGCAACTTGAGTTCGATAATAACCGATTCTCTGGTAAGATTCCGTCTGTTATGGGGAACTTGAAGGAACTCACTCTCTTCTATGCATGGCAGAATCAGCTTAATGGAAATATACCAACAGAATTATCTAACTGTGAGAAACTTGAAGCAGTTGATCTTTCGCACAATTTCCTCACCGGTCCAATTCCGAATTCTCTCTTTCATTTGCAGAATTTAACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCACCCGATATCGGCAGGTGCACAAGCTTGATCAGGTTAAGACTTGGATCAAACAATTTTACCGGTCAACTTCCGCGAGAAATAGGCCTTTTGAGAAGTTTAACCTTTCTAGAGCTTTCAGATAATCAAGTCAGTGGAGACATTCCTTATGAGATAGGTAACTGTGCTCATTTAGAAATGCTTGACTTGCATAAAAATGAGCTTCAAGGAACCATTCCTTCATCATTAAAATTCTTAGTTGATCTCAACGTCTTGGATCTTTCTTCAAACCGAATCACCGGAAGCATTCCTAAGAGCTTCGGCAAGCTTACGTCGTTAAATAAGTTGATTCTAAGCGGAAACCTTATCGCCGGTTCGATCCCTCAGTCGCTAGGACTTTGTAAGGATTTGCAGTTGCTTGATTTAAGTAACAATAAGATCATAGGTTCTATTCCAAATGAGATTGGTTACTTGCAAGGATTGGATATACTCTTGAACTTGAGTTGGAATTCTCTTACTGGTTCAATTCCAAAGACTTTTTCGAATCTCTCAAAACTCTCAATCTTGGACCTATCTTACAACAAGATCACAGGTACTCTTATAGTACTTGGTAACCTTGATAATCTTGTGTCTCTAAATGTTTCCTACAATAGATTTTCCGGTACTCTTCCCGACACGAAGTTCTTCCAAGATTTACCTTCTGCTGCATTCGCCGGTAACCCTGATCTGTGCATTAACAGCAAGTGTCGTGCAAGTGGAAGTCTCGAAGGAAACAAGTCGATAAGAAATATTATTATCTACACTTTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCACTAAGGATTCAAGGGGACAGTTATTATGGGAGAAATAATTTTGATGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAAAAGCTTAACTTCAACATCAGCGACGTGGTCTCAAAGTTGTCGGATTCAAATATCGTCGGAAAGGGTGGCTCGGGCGTTGTTTACCGCGTAGAGACTCCGACAAAACAGATTATTGCGGTGAAGAAGCTATGGCCGATAAAGAATGGAGAGGCACCAGAGAGAGATTTTTTTACAGCAGAAGTTCAGACGCTTGGATCGATAAGGCATAAAAATATAGTCAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGACTGCTGTTGTTTGATTACATATGTAATGGAAGTTTGTTTGGGTTGCTCCACGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTACAAGATCATAATTGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTCGGTCCACAGTTTGAACCTTTTCTTGCAGATTTCGGCCTTGCGAAATTGGTCATTTCCTCAGATTGCTCAAGAGCCTCACATGTAGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGCGACGTGTACAGTTACGGCGTTGTGCTTCTCGAGATGTTAACCGGAATGGAACCAACCGATAACAGGATTCCAGAGGGTGCTCACATTGTAACATGGGTTATCAGTGAAATCAGAGAGAAGAAAAGAGAATTCACAACTATTCTTGATCAGCAGTTATTATTGCAATGTGGAACAAGAACACCGGAGATGCTTCAAGTGTTAGGTGTGGCTCTTCTATGTGTGAATCCATCACCAGAAGAAAGACCTACAATGAAAGATGTAACAGCAATGCTCAAAGAGATTAGCCATGAAAATGATGATTTGGAAAAACCAAATCTTCTGCATAATAAAGGCATGGTTGCCAATCCAAAAGCAGCAGTTCATTGTTCTAGCTTCTCAAGATCATGTGAACTTTTGATAGAATCATCATCTTCTTCTTCATAG 3282 0.3927 MSNNALNFLVLFFTISLFPFVSSLNQEGLSLLSWLSTFNSSNLETSTTAFSSWDPAHKTPCRWDYIKCSAEEFVEEIVITSIDLRSGFPIQILSFNHLKTLVISNGNLTGEIPSSVGNLSSTLVTLDLSFNSLTGKIPEEIGKLSELRWLSLNSNSLRGGIPTSIGNCSRLQHLELFDNQLSGMIPGEIGQLKALMSLRVGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGQIPPEIQNCSALEDLFLYENQLSGKIPYELGSMQSLKRVLLWKNNLTGTIPESLGNCTNLKVIDFSLNSLIGQLPSTLGNLLSLEEFLLSDNNIYGEIPSYVGNFSMLKQLEFDNNRFSGKIPSVMGNLKELTLFYAWQNQLNGNIPTELSNCEKLEAVDLSHNFLTGPIPNSLFHLQNLTQLLLISNRLSGQIPPDIGRCTSLIRLRLGSNNFTGQLPREIGLLRSLTFLELSDNQVSGDIPYEIGNCAHLEMLDLHKNELQGTIPSSLKFLVDLNVLDLSSNRITGSIPKSFGKLTSLNKLILSGNLIAGSIPQSLGLCKDLQLLDLSNNKIIGSIPNEIGYLQGLDILLNLSWNSLTGSIPKTFSNLSKLSILDLSYNKITGTLIVLGNLDNLVSLNVSYNRFSGTLPDTKFFQDLPSAAFAGNPDLCINSKCRASGSLEGNKSIRNIIIYTFLGVILTSAIVTCGVILALRIQGDSYYGRNNFDEVEMEWSFTPFQKLNFNISDVVSKLSDSNIVGKGGSGVVYRVETPTKQIIAVKKLWPIKNGEAPERDFFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIIIGTAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEPFLADFGLAKLVISSDCSRASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGVVLLEMLTGMEPTDNRIPEGAHIVTWVISEIREKKREFTTILDQQLLLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEISHENDDLEKPNLLHNKGMVANPKAAVHCSSFSRSCELLIESSSSSS* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 525 607 IPR032675 -
Psa5g1921 1093 Pfam Protein kinase domain 772 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1921 1093 SUPERFAMILY Protein kinase-like (PK-like) 753 1044 IPR011009 -
Psa5g1921 1093 ProSitePatterns Protein kinases ATP-binding region signature. 775 803 IPR017441 GO:0005524
Psa5g1921 1093 ProSiteProfiles Protein kinase domain profile. 769 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1921 1093 PRINTS Leucine-rich repeat signature 532 545 - -
Psa5g1921 1093 PRINTS Leucine-rich repeat signature 626 639 - -
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 426 524 IPR032675 -
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 608 694 IPR032675 -
Psa5g1921 1093 Gene3D Phosphorylase Kinase; domain 1 740 847 - -
Psa5g1921 1093 PANTHER LRR RECEPTOR-LIKE KINASE 3 1065 - -
Psa5g1921 1093 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Psa5g1921 1093 Pfam Leucine rich repeat 608 662 IPR001611 GO:0005515
Psa5g1921 1093 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 225 328 IPR032675 -
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 329 425 IPR032675 -
Psa5g1921 1093 Gene3D Transferase(Phosphotransferase) domain 1 848 1066 - -
Psa5g1921 1093 Gene3D Ribonuclease Inhibitor 24 224 IPR032675 -
Psa5g1921 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Psa5g1921 1093 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1065 - -
Psa5g1921 1093 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
Psa5g1921 1093 SMART LRR_typ_2 337 361 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 433 457 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 529 552 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 553 577 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 649 682 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 601 625 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 289 313 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 144 168 IPR003591 -
Psa5g1921 1093 SMART LRR_typ_2 481 505 IPR003591 -
Psa5g1921 1093 SUPERFAMILY RNI-like 319 667 - -
Psa5g1921 1093 ProSiteProfiles Leucine-rich repeat profile. 579 601 IPR001611 GO:0005515
Psa5g1921 1093 SMART serkin_6 769 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1921 1093 SUPERFAMILY L domain-like 82 379 - -
Psa5g1921 1093 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1921 Psa-Chr5 147882653 147886757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1921 23 1083 Receptor kinase-like Gene Family AT5G56040 45.530 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa5g1921 Pkinase 8.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1921 - - gmx:100807225 1745.71