Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1914 ATGGATGATTCTTCTTCAGCTGCTGAAGACACCAAAAGTTGTCCCCGCGGTCACTGGCGACCCGCTGAAGACGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCACAAAATTGGAATTCTATTGCAGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTAAGGTGGTTCAATCAGTTAGATCCAAGAATTAACAGAAGACCTTTTACAGAAGAGGAAGAAGAGAGACTACTCGCGGCGCATCGGATTCACGGAAACAAATGGGCACTAATAGCAAGACTTTTTCCAGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATTATGGCAAGAAAACAAAGGGAACAATCTAAGTTATGCGGTAAAAGAACCTTTCAAGAAGTTTTTAACAACTCCTCAATTCTTAATTTTCCTTATACAACAAGAAATATTGGATATGAGAATGGAAAATTCTTTGATAATAGTACTTCTTCAAATTCTCTTGCTTCTTGGAATTTCGCTTCTGCTACTACTGATACTACTTCTATTGTATTGGATAATTCCATTACGAAAAAAGGTTCAAATATTTATAAGGGCTCGGATAGATCATTTGTCTACAGAATTTGTCCAAATCTTCCAAGCTACAAGAGAGTTGTTTCAAATCCTTTTAGTTTTTTGAGTTCCGATGGCGACGGAAGGGTTAGAAATTCGGATAATTTGGTGAGTAGTTTATGCGATAAATCGTCGAAGTTAATCACAAACTTAAACTCTTCCAAAGAGAAAGAGTTGCAAGAAGATCATCATCGTGAAGCTGAACAGCATAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTTTCTTCATCATAA 864 0.3715 MDDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFQEVFNNSSILNFPYTTRNIGYENGKFFDNSTSSNSLASWNFASATTDTTSIVLDNSITKKGSNIYKGSDRSFVYRICPNLPSYKRVVSNPFSFLSSDGDGRVRNSDNLVSSLCDKSSKLITNLNSSKEKELQEDHHREAEQHKEVPFIDFLGVGVSSS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1914 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Psa5g1914 287 SMART sant 67 115 IPR001005 -
Psa5g1914 287 SMART sant 15 64 IPR001005 -
Psa5g1914 287 PANTHER TRANSCRIPTION FACTOR MYB56 5 285 - -
Psa5g1914 287 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Psa5g1914 287 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Psa5g1914 287 CDD SANT 19 60 IPR001005 -
Psa5g1914 287 CDD SANT 70 110 IPR001005 -
Psa5g1914 287 Gene3D - 70 130 - -
Psa5g1914 287 Pfam Myb-like DNA-binding domain 19 79 - -
Psa5g1914 287 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g1914 287 Gene3D - 16 67 - -
Psa5g1914 287 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa5g1914 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa5g1914 287 PANTHER MYB PROTEIN-RELATED 5 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1914 Psa-Chr5 147443296 147445484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1914 14 287 MYB Transcription Factor Family AT1G17950 43.771 1.55e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g1914 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1914 K09422 - gmx:100817328 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1914 5 147443296 147445484 Psa5g1914 5 147443296 147445484 ECH